Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I7830_RS06180 Genome accession   NZ_CP065795
Coordinates   1198820..1199347 (+) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain GDH8C110P     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1193820..1204347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7830_RS06155 (I7830_06155) - 1195270..1196106 (+) 837 WP_107565142.1 ParB/RepB/Spo0J family partition protein -
  I7830_RS06160 (I7830_06160) - 1196118..1197002 (+) 885 WP_078099956.1 mechanosensitive ion channel family protein -
  I7830_RS06165 (I7830_06165) - 1197026..1197223 (+) 198 WP_025906204.1 DUF951 domain-containing protein -
  I7830_RS06170 (I7830_06170) ychF 1197227..1198327 (+) 1101 WP_119489105.1 redox-regulated ATPase YchF -
  I7830_RS06175 (I7830_06175) rpsF 1198499..1198792 (+) 294 WP_025906202.1 30S ribosomal protein S6 -
  I7830_RS06180 (I7830_06180) ssbA 1198820..1199347 (+) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  I7830_RS06185 (I7830_06185) rpsR 1199407..1199649 (+) 243 WP_025906198.1 30S ribosomal protein S18 -
  I7830_RS06190 (I7830_06190) - 1200230..1200373 (-) 144 WP_182670649.1 hypothetical protein -
  I7830_RS06195 (I7830_06195) - 1200684..1201217 (-) 534 WP_107565141.1 hypothetical protein -
  I7830_RS06200 (I7830_06200) - 1201352..1202197 (+) 846 WP_107565140.1 DUF2785 domain-containing protein -
  I7830_RS06205 (I7830_06205) - 1202346..1203236 (+) 891 WP_198052426.1 PhzF family phenazine biosynthesis protein -
  I7830_RS06210 (I7830_06210) - 1203280..1204077 (-) 798 WP_107596389.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=514630 I7830_RS06180 WP_025906200.1 1198820..1199347(+) (ssbA) [Mammaliicoccus sciuri strain GDH8C110P]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=514630 I7830_RS06180 WP_025906200.1 1198820..1199347(+) (ssbA) [Mammaliicoccus sciuri strain GDH8C110P]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTTTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537