Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   KX728_RS04775 Genome accession   NZ_CP079724
Coordinates   965743..969018 (-) Length   1091 a.a.
NCBI ID   WP_215804679.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 960743..974018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS04765 (KX728_04760) - 960745..961923 (-) 1179 WP_215804681.1 hypothetical protein -
  KX728_RS04770 (KX728_04765) rexA 962093..965746 (-) 3654 WP_215804680.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  KX728_RS04775 (KX728_04770) rexB 965743..969018 (-) 3276 WP_215804679.1 ATP-dependent nuclease subunit B Machinery gene
  KX728_RS04780 (KX728_04775) - 969125..969544 (-) 420 WP_215804678.1 EVE domain-containing protein -
  KX728_RS04785 (KX728_04780) - 969537..969998 (-) 462 WP_070567357.1 MarR family winged helix-turn-helix transcriptional regulator -
  KX728_RS04790 (KX728_04785) - 970145..970954 (+) 810 WP_206283660.1 Cof-type HAD-IIB family hydrolase -
  KX728_RS04795 (KX728_04790) - 971097..972005 (+) 909 WP_215804677.1 ATP-binding cassette domain-containing protein -
  KX728_RS04800 (KX728_04795) - 972016..972768 (+) 753 WP_215804676.1 ABC transporter permease -
  KX728_RS04805 (KX728_04800) - 972807..973685 (-) 879 WP_215804675.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124731.47 Da        Isoelectric Point: 5.7049

>NTDB_id=514627 KX728_RS04775 WP_215804679.1 965743..969018(-) (rexB) [Streptococcus oralis strain 34]
MKLLYTDIRSSLTEILTREAEELVVAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFTQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAELDPKDLRVYGAIKQDPQFIQQLIELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFSQLALVIDGFTRFSAEEERVVDLLHRKGAEIVIGAYASKKAYTSPFTEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKMDSFDKASRLLESSYDFSELTLEVDEKDRENLQIWSCLMQKEELELVARAIRQKLH
DHPELSYKNFRILLGDVASYQLSLKTIFEQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDTFEQYLRYLGINGLPAFQQTFTKSHHGKFDLERLNSLRLRVLVPLETLFASRKQKTENLLQKWNTFLKNAALSK
QMQELTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARNQLILSAPSLLNENE
SKESAYLQELVSFGFSRIEKKIHQKSLSKDDMGSYHSLLSSLVAYHQQGETSNTEQDLTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFEHALKLPA
ENPFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMTEPVQSLLAVKSLA
GAVAEVSKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQAHFLEKLELSDGKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=514627 KX728_RS04775 WP_215804679.1 965743..969018(-) (rexB) [Streptococcus oralis strain 34]
ATGAAATTACTTTATACTGATATACGGTCTTCTTTGACTGAAATTTTAACAAGAGAAGCGGAAGAGCTAGTTGTCGCGGG
CAAGCGGGTCTTCTACATTGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGTTTCACTCAAATGGCTCGTTACCTGGTTTTAAATGACTTGCCGACTAAAACTAGT
CTAGATGACATCGGGCTTGGGATGGCTTTTTATAAGTGCCTTGCGGAACTCGATCCCAAGGACTTACGTGTTTATGGTGC
AATTAAGCAGGATCCTCAATTTATCCAGCAGTTGATTGAACTTTATCATGAGATGACGACTGCTCAGATGAGCTTTTTGG
ACTTGGAAAGTCTGACAGATGAGGATAAGCGAGCAGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTCAATCAA
GGTCAGTTGGCTCAGGGAAGTCAGTTATCTCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGTAGTGATTTCAGTCA
ACTTGCCTTAGTCATTGACGGATTTACCCGTTTTTCTGCCGAGGAAGAGCGTGTAGTGGATCTACTCCACCGAAAAGGTG
CCGAGATTGTCATTGGGGCCTATGCAAGCAAGAAAGCTTATACCAGTCCGTTTACTGAAGGAAATCTCTATCAAGCCAGT
GTGGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACACATGAGAAAATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGACTTTTCAGAATTAACATTGGAGGTTGATGAGAAAGACCGTG
AAAATCTGCAAATTTGGTCTTGTTTGATGCAAAAAGAGGAGTTGGAGCTGGTGGCTCGCGCTATTCGTCAGAAATTACAT
GACCATCCAGAATTAAGTTACAAGAATTTTCGTATTCTCTTGGGTGATGTGGCTTCTTACCAGTTATCGCTGAAAACCAT
TTTTGAGCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGGCCCATCATCCCTTAACCCAGTATGTCGAAT
CTATTTTGCGTTTGAAACGCTACCGTTTCCGTCAGGAGGATTTGATTAATCTCCTCCGAACTGGTCTGTATACTGACCTT
AGCCAAGCGGATATTGATACTTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTTCAGCAGACCTT
CACAAAATCCCACCATGGAAAATTTGATTTAGAGCGTTTAAATTCTCTTCGGCTGCGAGTTTTGGTACCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAAGACTGAAAATCTCTTGCAAAAGTGGAATACTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAGCTACCATGGAAGCTCTTGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCGTTCTGTCATGT
TTTAGAACAATTTGCGACGGTTTTTGCTGGTTCACAAGTTAGTCTGGAGGATTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCCCAGTATCGCACCATTCCAGCAACTGTTGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCGCCCTTAACG
GCTGATTTTGTCTATGCCATTGGGCTGACTCAGGATCATTTACCAAAAATTGCGCAAAACACCAGCCTGTTAACAGACGA
AGAAAGACAAAGCCTAAACCAAGCGACTGAAGAGGGAGCACAATTACTGATTGCAAGTAGTGAAAACCTCAAGAAAAATC
GCTACACCATGCTTTCCTTAGTCAATGCTGCCCGTAATCAGTTGATTTTGTCAGCTCCAAGTCTCCTCAATGAAAATGAG
AGCAAGGAATCGGCCTATCTTCAGGAACTGGTGAGTTTTGGATTTAGCCGAATAGAGAAGAAGATTCATCAAAAAAGTCT
GTCTAAGGATGATATGGGTTCATATCACAGCCTTTTGTCTAGTCTGGTTGCCTATCATCAGCAGGGCGAGACAAGTAATA
CTGAGCAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGGAAAAAACTTGACCAAAAAGGTCTTACAAATCCA
GCACTCCCAACTAGCCCAAGCAGCAAGCCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCCGCTGACAAAGAGTTTTA
CCTGTCTACGTCTGGTTTGACTGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGGCTTCGTCCAGATGCTCGCAGTCACGGGAATTTCTTGCACCGCATTTTTGAGCATGCCTTGAAACTACCTGCT
GAAAATCCATTTGACCAGCGTTTGGAGCAAGCTATTCAAGAAACTAGTCAAGAACGGGAATTTGAAGCCATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTCTACTTGATGTCGCGCGAACTACGGGCCACATCCTTCGTCATAATCCAG
CTATCGAAACCATTCAAGAGGAGGCAACATTTGGTGGTAAAGATCAAGCCTTTATTCAATTGGATAATGGTCGCAGTGTC
CATGTGCGAGGCAAGGTTGACCGTATTGACCGCCTGAAAGCTGATGGAGCGCTAGGAGTGGTGGACTATAAGTCTAGTTT
GACCCAATTCCAGTTTCCTCATTTCTTTAATGGGCTTAATTCCCAACTGCCTACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGTGCCATGTACTTGGAAATGACTGAGCCTGTCCAATCTTTATTAGCTGTTAAAAGTCTGGCA
GGAGCAGTAGCAGAAGTCAGCAAGTCTATGAAATACCAGGGACTCTTTTTAGAGAAAGAAAGCAGTCACTTGGGAGAGTT
TTATAACAAAAACAAGGCCAATCAGCTGACAGACGAGGAATTCCAGCTCCTACTAGACTATAATGCCCATCTGTACAAGA
AGGCAGCTGAGAAGATTTTAGAAGGCCAGTTTGCCATCAATCCATATACAGAAAACGGCAGAAGTATTGCTCCATACGTC
CAGCAACACCAAGCCATCACAGGTTTTGAAGCAAATTACCACTTGGGACAAGCCCATTTCCTTGAGAAATTAGAGTTGTC
TGACGGCAAACGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

89.918

100

0.899