Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   I7830_RS05665 Genome accession   NZ_CP065795
Coordinates   1091189..1092814 (+) Length   541 a.a.
NCBI ID   WP_198052390.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDH8C110P     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086189..1097814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7830_RS05645 (I7830_05645) ssb 1087278..1087526 (+) 249 WP_198052386.1 cassette chromosome ssDNA-binding protein -
  I7830_RS05650 (I7830_05650) cch1 1087526..1089313 (+) 1788 WP_198052387.1 cassette chromosome replicative helicase -
  I7830_RS05655 (I7830_05655) - 1089349..1089639 (+) 291 WP_198052388.1 hypothetical protein -
  I7830_RS05660 (I7830_05660) ccrA 1089818..1091167 (+) 1350 WP_198052389.1 cassette chromosome recombinase CcrA Machinery gene
  I7830_RS05665 (I7830_05665) ccrB 1091189..1092814 (+) 1626 WP_198052390.1 cassette chromosome recombinase CcrB Machinery gene
  I7830_RS05670 (I7830_05670) - 1092902..1093636 (+) 735 WP_061054987.1 glucose 1-dehydrogenase -
  I7830_RS05675 (I7830_05675) - 1094207..1094545 (+) 339 WP_198052473.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I7830_RS05680 (I7830_05680) - 1094641..1094952 (+) 312 WP_198052391.1 DUF960 family protein -
  I7830_RS05685 (I7830_05685) - 1094966..1095472 (+) 507 WP_119627602.1 DUF1643 domain-containing protein -
  I7830_RS05690 (I7830_05690) - 1095487..1095708 (+) 222 WP_198052392.1 hypothetical protein -
  I7830_RS05695 (I7830_05695) - 1095940..1097814 (-) 1875 WP_198052393.1 SNF2-related protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62123.87 Da        Isoelectric Point: 9.6117

>NTDB_id=514626 I7830_RS05665 WP_198052390.1 1091189..1092814(+) (ccrB) [Mammaliicoccus sciuri strain GDH8C110P]
MNEMKRKRVGGYIRVSTEMQTDGYSPKSQINQIKEYCQFHGYEVIDIYADEGISGKSMNRPGLQRMIKDAKEGKLDCVMV
YKTNRLARNTSDLLTIVENLHRQNVEFFSLSERMEVSSSSGKLMLQILASFSEFERNNIVENVFQGQQQRALEGYYQGNI
PLGYSIIPDNKKELMINQHEANIVNYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAKY
KDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKIINQVLQRVNQENKVDIGALNHDIAYKQQQYDE
IHPKLDNLIKTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQRIFQNIESLDKSQLKA
LYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLSQTLYIHI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=514626 I7830_RS05665 WP_198052390.1 1091189..1092814(+) (ccrB) [Mammaliicoccus sciuri strain GDH8C110P]
ATGAATGAAATGAAAAGAAAGCGTGTGGGAGGGTACATTCGTGTATCGACTGAAATGCAGACGGATGGCTATTCTCCCAA
ATCTCAAATTAACCAGATTAAGGAATATTGTCAATTTCATGGTTATGAAGTGATTGATATTTATGCCGATGAAGGTATTT
CTGGAAAGTCTATGAACCGCCCAGGATTACAACGTATGATAAAAGATGCTAAAGAAGGAAAATTAGACTGTGTTATGGTA
TATAAAACAAATCGTCTAGCTCGTAATACATCTGATTTATTAACCATTGTTGAAAATCTTCATCGTCAAAATGTCGAATT
TTTTAGCTTGTCTGAACGTATGGAAGTAAGTAGTTCCAGTGGGAAATTAATGTTACAAATTTTGGCTAGTTTTTCAGAAT
TTGAAAGAAATAACATCGTTGAAAATGTTTTTCAAGGCCAACAGCAAAGAGCCTTAGAAGGCTATTATCAAGGCAATATT
CCTTTAGGATATTCTATTATACCTGATAATAAAAAAGAATTAATGATTAACCAACATGAAGCCAATATTGTGAACTATAT
CTTTGAATCATACGCCAAAGGTCATGGATATCGTAAAATGGCCAATGCACTCAATCATAAAGGATATGTAACTAAGAAAG
GTAATCCATTCAGTACATCAGCTATAGCATACATCCTTTCCAATCCTTTTTACATTGGTAAAATACAATTTGCGAAATAT
AAAGATTGGAATGAAAAGCGACGTAAAGGCCTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCGCCTATCATTAG
TCAAGAACTATGGGATAAAGTACATTCACGTATGAAACAAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCAATC
TATTAACGGGTATTATTCACTGTCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGATGGT
ACTAAGAAGCGAATACGTTATTATTCTTGTAGTAACTTCAGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGTTAG
AGCTGATGTTATTGAAAAATACGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAATCATTAACCAAGTCTTAC
AACGTGTCAATCAGGAGAATAAAGTCGATATCGGTGCATTGAACCACGATATCGCTTATAAACAACAACAATACGATGAA
ATCCATCCGAAACTAGACAACTTGATTAAAACCATTGAAGATAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTCAATGACATTACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCATCTT
ATGATACGAAACAAATCGCTGCCCTATTACAACGAATCTTTCAAAATATAGAATCCTTGGATAAATCACAACTCAAGGCA
TTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAAACT
CAATAATGAAATTATTAAACAACTTTTCAATAACACTCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTAT
CTCAAACACTCTATATTCATATATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-154)

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)

Recombinase (Recombinase)

(179-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

81.365

100

0.815