Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   KX728_RS04770 Genome accession   NZ_CP079724
Coordinates   962093..965746 (-) Length   1217 a.a.
NCBI ID   WP_215804680.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957093..970746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS04745 (KX728_04740) - 958323..959102 (-) 780 WP_219108683.1 ribonuclease HII -
  KX728_RS04750 (KX728_04745) ylqF 959089..959940 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -
  KX728_RS04755 (KX728_04750) mazE 960156..960371 (+) 216 WP_001098942.1 type II toxin-antitoxin system PemI/MazE family antitoxin -
  KX728_RS04760 (KX728_04755) - 960355..960711 (+) 357 WP_061427366.1 type II toxin-antitoxin system PemK/MazF family toxin -
  KX728_RS04765 (KX728_04760) - 960745..961923 (-) 1179 WP_215804681.1 hypothetical protein -
  KX728_RS04770 (KX728_04765) rexA 962093..965746 (-) 3654 WP_215804680.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  KX728_RS04775 (KX728_04770) rexB 965743..969018 (-) 3276 WP_215804679.1 ATP-dependent nuclease subunit B Machinery gene
  KX728_RS04780 (KX728_04775) - 969125..969544 (-) 420 WP_215804678.1 EVE domain-containing protein -
  KX728_RS04785 (KX728_04780) - 969537..969998 (-) 462 WP_070567357.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140281.54 Da        Isoelectric Point: 5.0179

>NTDB_id=514626 KX728_RS04770 WP_215804680.1 962093..965746(-) (rexA) [Streptococcus oralis strain 34]
MKPISFLTEEEIQKLQKAEASSSKEQKKTAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAATELKERLEKKISQQIQETDDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLLLK
NEVFHQVFEEHYQGENKEKFSRLVKNFAGRGKDERGLRQQVYKIYDFLQSTSSPQKWLNESFLKGFEEADFANEKDKLTE
QIKQALWDLESFFRYHLDNDAKEFPKAAYLENVQLVLDEISSLNQESDSQAYQAVLTRVVVISKEKNGRALANSSRKADL
KPLVDAYNEERKAQFAKLGQLADQITILDYQEHYHEDTWDLAKTFQNFMSDFVNAYRERKRQENAFEFADISHYTIEVLE
NFPQVREAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGKLIL
LKENFRSSSEVLSATNDVFARLMDQEVGEINYDSMHQLVFANTKLTPNPENKAEFLLYDKDDSGQEEEESQAETKLTGEM
RLVIKEILKLHQEKGVAFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFGFDEDELARLSLQKAEDKVQENLFEKLINAQKQAARQKELIHTALAEKLNQFMDILDSWRLYAKTHSLYDLI
WKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHK
SKGLEFPYVFILNMDQDFNKQDSTSDVILSRQNGLGVKYIAKVETGAVEAHYPKTIKLSIPSLTYTQNEKELQLASYSEQ
MRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPSAESGKLDSNTRLQARNFQDWIWAISKVFAKEDLNFSYRFIGEDQLTR
EAIGQLENKSPLQDSSQADNRQSETIKEALEVLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEITNQTQST
EKPISFDLPDFSTKEKVTGAEIGSATHELMQRIDLSQQPTLASLTETLKQVQTSPAVRDKINLSKILAFFDTPLGQEILA
NTDHLYREQPFSMLKKDQKSQEDFVVRGILDGYLLYEDRIILFDYKTDRYDQPSQLIDRYRGQLALYGEALSRAYSIENI
EKYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=514626 KX728_RS04770 WP_215804680.1 962093..965746(-) (rexA) [Streptococcus oralis strain 34]
ATGAAGCCCATTTCCTTTTTAACTGAGGAAGAAATTCAAAAACTGCAAAAAGCAGAAGCAAGTTCGAGCAAGGAACAGAA
GAAAACAGCCGAGCAAATCGAAGCCATTTATACCGCAGGGCAAAATATCCTTGTTTCAGCGTCTGCTGGTTCAGGGAAGA
CCTTTGTCATGGCAGAGCGTATTCTGGATCAGTTAGCACGTGGTGTGGAAATCAGCCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCTACAGAACTCAAGGAACGTTTGGAGAAAAAAATCAGCCAACAAATACAAGAAACCGATGATGTCGATCT
CAAACAACACTTGGGACGCCAGTTGGCAGATCTACCAAACGCTGCCATCGGAACCATGGACTCCTTCACGCAAAAATTCC
TTGGCAAACATGGCTATCTGATTGATATCGCACCGAACTTCCGTATTTTGCAAAATGAAAGTGAACAGTTACTCTTAAAG
AACGAAGTTTTTCATCAGGTTTTTGAAGAGCATTACCAAGGTGAAAATAAAGAGAAATTTAGTCGATTAGTGAAAAACTT
TGCTGGACGTGGCAAGGATGAACGAGGTCTGCGCCAGCAAGTCTACAAAATCTATGATTTCCTTCAATCCACCAGCAGTC
CCCAAAAATGGCTGAACGAGTCTTTCCTCAAAGGGTTTGAAGAAGCTGACTTTGCAAATGAAAAAGACAAACTAACTGAG
CAAATCAAGCAGGCGCTTTGGGACTTGGAAAGTTTCTTCCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCAAAAGC
TGCCTATTTAGAAAATGTGCAGCTGGTTCTGGATGAAATTAGCTCCTTAAATCAGGAGTCCGATAGCCAGGCTTATCAAG
CAGTGCTTACGCGTGTTGTCGTCATCTCTAAGGAGAAAAATGGTCGAGCTCTGGCTAACTCCAGTCGTAAGGCCGATTTA
AAGCCACTTGTTGATGCCTACAACGAAGAGAGAAAGGCCCAGTTTGCTAAACTAGGACAACTGGCGGACCAGATAACGAT
TCTCGACTACCAAGAACATTATCATGAAGATACTTGGGATCTAGCTAAAACCTTCCAAAACTTTATGAGTGATTTTGTGA
ATGCTTATCGTGAACGTAAACGCCAGGAAAATGCCTTTGAATTTGCTGATATCAGTCATTACACCATTGAGGTTTTAGAG
AATTTCCCACAAGTCCGCGAGGCTTATCAGGAACGATTCCATGAAGTCATGGTCGATGAGTATCAGGATACCAACCACAT
TCAAGAACGAATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAGTCCATCTACCGGT
TCCGTCAGGCAGATCCTCAGATCTTCAATGAAAAATTCCAACGCTATGCGCAAAATCCCCAAGAAGGCAAGTTGATTCTC
CTCAAGGAAAATTTCCGTAGTAGTTCAGAAGTTCTGTCAGCAACCAATGATGTTTTTGCACGCCTTATGGACCAAGAAGT
CGGAGAAATCAACTACGATAGCATGCACCAGCTTGTTTTTGCCAATACCAAACTGACTCCTAATCCTGAGAACAAGGCAG
AGTTTCTCTTATACGACAAGGACGATAGTGGGCAAGAGGAGGAAGAGAGCCAAGCAGAAACGAAACTCACTGGAGAAATG
CGTCTGGTCATCAAGGAAATCTTGAAGCTCCATCAAGAGAAAGGTGTAGCCTTTAAAGAAATAGCCCTTTTGACTTCCAG
TCGCAGTCGAAATGACCAGATCCTCCTAGCTCTGTCTGAGTACGGAATTCCAGTTAAAACCGACGGTGAGCAAAACAACT
ACCTCCAATCCCTAGAAGTACAAGTCATGCTGGACACCCTGCGCGTCATTCACAATCCCCTGCAAGACTATGCCTTGGTA
GCCCTTATGAAGTCTCCTATGTTTGGTTTTGATGAGGACGAGTTGGCACGTTTATCCCTCCAGAAAGCAGAAGATAAAGT
CCAAGAGAATCTTTTTGAGAAACTGATCAATGCTCAAAAACAAGCAGCTAGGCAGAAAGAGTTAATTCATACAGCTCTAG
CGGAAAAATTAAATCAATTCATGGATATCTTGGATTCTTGGCGCCTGTATGCCAAAACTCACTCTCTCTATGACTTGATT
TGGAAGATTTACAACGACCGTTTTTATTATGACTATGTTGGGGCTTTGCCGAACGGACCTGCTAGACAGGCTAATCTCTA
TGCCCTAGCTCTACGAGCTGACCAGTTTGAAAAGAGCAATTTCAAGGGCTTGTCGCGTTTTATCCGTATGATTGACCAAG
TCCTAGAAGCCCAGCACGATCTCGCAAGCGTAGCCGTCGCACCGCCAAAAGATGCTGTAGAACTTATGACCATTCACAAG
AGTAAAGGACTAGAGTTTCCTTATGTCTTTATCCTCAACATGGATCAGGACTTCAACAAACAAGACTCGACGTCAGACGT
CATTCTCAGTCGTCAAAATGGGCTTGGTGTCAAATACATTGCCAAGGTGGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATTAAACTCTCTATTCCTAGCTTAACTTATACGCAGAATGAGAAAGAACTGCAACTGGCTAGCTATTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACGAGAGCTGAGAAAAAGCTCTATCTTGTCGGCAAGGGTTCTCGTGAAAAGCTAGA
AGCAAAGGAATATCCATCAGCTGAGAGCGGAAAATTAGATAGCAATACCAGACTGCAAGCAAGAAATTTCCAAGATTGGA
TCTGGGCTATCAGCAAAGTATTTGCCAAGGAAGATCTCAACTTTAGCTATCGTTTTATTGGTGAAGACCAGCTGACCAGA
GAAGCTATTGGTCAATTGGAAAACAAGAGTCCTCTACAAGATAGCTCTCAAGCAGACAACCGCCAGTCAGAAACCATCAA
AGAAGCTTTGGAAGTGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGTGCAGCCATTGAGCTTCCTAGCGTTCAAA
CCCCAAGCCAAATCAAGAAATTCTACGAACCCGTTATGGATATGGAAGGGGTAGAAATTACTAACCAAACTCAATCAACA
GAGAAGCCAATCAGCTTTGATTTACCCGATTTTTCAACTAAAGAAAAAGTAACTGGAGCTGAGATTGGTAGTGCCACTCA
CGAACTCATGCAGAGAATTGACCTTAGTCAGCAACCAACACTTGCTAGCCTGACAGAAACTCTCAAACAAGTTCAGACTA
GTCCAGCTGTGAGAGACAAGATTAATCTTTCTAAAATCCTTGCTTTCTTTGACACACCACTTGGTCAGGAGATTCTTGCT
AATACAGACCATCTTTATCGCGAGCAACCTTTCTCTATGCTCAAAAAAGATCAAAAGAGTCAGGAAGATTTTGTTGTTCG
TGGGATCTTGGACGGCTATCTACTTTATGAGGACAGAATTATTCTTTTCGACTATAAGACAGACCGTTACGATCAACCAA
GTCAACTCATAGACCGCTATCGTGGTCAGTTAGCCCTATACGGAGAGGCTTTATCACGAGCCTATTCGATTGAAAACATT
GAAAAATACTTGATTTTGCTCGGTAAAGATGAGGTTCAAGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

91.783

100

0.918