Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   KX728_RS04725 Genome accession   NZ_CP079724
Coordinates   954215..955285 (-) Length   356 a.a.
NCBI ID   WP_215804684.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949215..960285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS04710 (KX728_04705) - 950165..951208 (+) 1044 WP_215804685.1 dihydrolipoamide acetyltransferase -
  KX728_RS04715 (KX728_04710) lpdA 951254..952957 (+) 1704 WP_252344771.1 dihydrolipoyl dehydrogenase -
  KX728_RS04720 (KX728_04715) - 953153..954142 (+) 990 WP_033629757.1 lipoate--protein ligase -
  KX728_RS04725 (KX728_04720) xerS 954215..955285 (-) 1071 WP_215804684.1 tyrosine recombinase XerS Machinery gene
  KX728_RS04730 (KX728_04725) - 955464..955901 (-) 438 WP_084921865.1 MepB family protein -
  KX728_RS04735 (KX728_04730) - 955967..956707 (-) 741 WP_215804683.1 CPBP family intramembrane glutamic endopeptidase -
  KX728_RS04740 (KX728_04735) - 956760..958310 (-) 1551 WP_084883148.1 ClC family H(+)/Cl(-) exchange transporter -
  KX728_RS04745 (KX728_04740) - 958323..959102 (-) 780 WP_219108683.1 ribonuclease HII -
  KX728_RS04750 (KX728_04745) ylqF 959089..959940 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41199.28 Da        Isoelectric Point: 9.6031

>NTDB_id=514625 KX728_RS04725 WP_215804684.1 954215..955285(-) (xerS) [Streptococcus oralis strain 34]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMADIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYIENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=514625 KX728_RS04725 WP_215804684.1 954215..955285(-) (xerS) [Streptococcus oralis strain 34]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTTGCTGTGCCCTACAGTTTTACAACCTTGTACGAATACCTCAAGGAATATGACCGATTTTTCAGCTGGGTTTTAG
AGTCTGGGATTTCAAATGCTGATAAAATGGCTGATATTCCTTTATCGGTCTTGGAAAACATGTCAAAGAAAGATATGGAA
TCCTTTATCCTTTATCTACGAGAACGACCTTTGCTGAATGCTAATACAACCAAACAAGGCGTTTCACAGACAACCATCAA
TCGAACCTTATCAGCACTTTCTAGCCTTTACAAATATCTAACTGAGGAGGTTGAAAATGACCAAGGAGAACCCTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACTAAGAAAAAGAAAGAAACCCTTGCTGCAAGAGCTGAAAACATCAAGCAAAAA
CTCTTTTTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGACCAAGAGTACCCTCAACAACTCTCAAATCGCGCTCT
CTCATCATTCAATAAAAATAAAGAACGTGATTTAGCCATTATTGCCCTTCTCTTGGCGTCTGGTGTCCGCTTATCTGAAG
CTGTTAATTTGGATCTAAGAGACCTTAATCTCAAAATGATGGTTATTGATGTCACACGTAAGGGGGGGAAACGTGACTCG
GTTAATGTCGCTGCCTTTGCCAAGCCTTATATAGAGAATTATCTCGCCATTCGAAATCAACGCTATAAGACAGAAAAGAC
GGATACAGCTCTCTTTTTGACACTCTATCGAGGTGTTCCTAATCGTATTGATGCTTCTAGTGTTGAAAAGATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTCCGTGTAACTCCCCACAAACTCCGCCATACCTTAGCAACCAGGCTCTATGATGCTACT
AAATCGCAAGTTTTGGTCAGCCACCAGCTAGGGCATGCTAGTACACAAGTCACTGACCTCTATACCCATATTGTCAATGA
TGAACAAAAGAATGCTTTGGATAGCTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986