Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   I7830_RS05660 Genome accession   NZ_CP065795
Coordinates   1089818..1091167 (+) Length   449 a.a.
NCBI ID   WP_198052389.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDH8C110P     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1084818..1096167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7830_RS05640 (I7830_05640) - 1085513..1087042 (+) 1530 WP_198052385.1 hypothetical protein -
  I7830_RS05645 (I7830_05645) ssb 1087278..1087526 (+) 249 WP_198052386.1 cassette chromosome ssDNA-binding protein -
  I7830_RS05650 (I7830_05650) cch1 1087526..1089313 (+) 1788 WP_198052387.1 cassette chromosome replicative helicase -
  I7830_RS05655 (I7830_05655) - 1089349..1089639 (+) 291 WP_198052388.1 hypothetical protein -
  I7830_RS05660 (I7830_05660) ccrA 1089818..1091167 (+) 1350 WP_198052389.1 cassette chromosome recombinase CcrA Machinery gene
  I7830_RS05665 (I7830_05665) ccrB 1091189..1092814 (+) 1626 WP_198052390.1 cassette chromosome recombinase CcrB Machinery gene
  I7830_RS05670 (I7830_05670) - 1092902..1093636 (+) 735 WP_061054987.1 glucose 1-dehydrogenase -
  I7830_RS05675 (I7830_05675) - 1094207..1094545 (+) 339 WP_198052473.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I7830_RS05680 (I7830_05680) - 1094641..1094952 (+) 312 WP_198052391.1 DUF960 family protein -
  I7830_RS05685 (I7830_05685) - 1094966..1095472 (+) 507 WP_119627602.1 DUF1643 domain-containing protein -
  I7830_RS05690 (I7830_05690) - 1095487..1095708 (+) 222 WP_198052392.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52293.48 Da        Isoelectric Point: 10.1401

>NTDB_id=514625 I7830_RS05660 WP_198052389.1 1089818..1091167(+) (ccrA) [Mammaliicoccus sciuri strain GDH8C110P]
MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQHILYISDKQSGRTDKRNGYLQITKLIQQEQYDVLCCYRLNRLHRN
LKNALELMKLCQKHHVHILSVCDGYFDMDKAFDRLKLNIFMSMAELESDNISEQVNNGLKEKARQGKLITTHAPFGYHYK
HGTFTINKNESLTVIAIFNYYLQGNGYKKISQFLEEDIKLLNRKPYQVRNIIMNPNYCGRVSNKYGTFDNMFPPIISKAM
YKKAQAIRVNKQVQRTPSANLLKQKIKCPCCRSTLTNMTISKKQHTLRYYVCPRNMNESRFVCDFKGINAQQLEDQVLAI
CKDFFQNKQIYPKINNKIRQQLKQHQHVETQNSVTQAQLIDKLAQGLIDAESFRKQTQSMNQKRKTIQSISDIQLQTSLQ
NVIQQSFTLNMLYPYIDEICITKNKNLIGIFFTNEPLNIVNQQSQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=514625 I7830_RS05660 WP_198052389.1 1089818..1091167(+) (ccrA) [Mammaliicoccus sciuri strain GDH8C110P]
ATGAAACGAGCCATTGGTTATTTACGCCAAAGTACAACGAAACAACAATCACTCCCAGCTCAAAAGCAAGCAATAGAATT
ATTAGCTCCAAAGCACAATATTCAACATATCCTATACATTAGTGATAAACAATCAGGACGCACAGATAAACGAAATGGAT
ATTTACAAATTACTAAACTTATTCAACAAGAACAATACGACGTGTTATGTTGTTACAGACTTAATCGATTACATCGTAAT
TTGAAAAATGCTTTGGAACTTATGAAGTTATGCCAAAAGCATCATGTTCACATCTTAAGTGTATGTGATGGCTATTTCGA
TATGGATAAAGCTTTTGATCGTCTAAAACTCAATATCTTTATGAGTATGGCAGAACTTGAGTCAGATAACATTAGTGAAC
AAGTAAACAACGGGTTAAAAGAAAAAGCACGTCAGGGTAAATTGATAACTACACACGCTCCCTTTGGCTACCACTACAAA
CATGGTACATTCACAATAAATAAAAATGAGTCACTAACGGTAATTGCCATATTCAATTACTACCTTCAAGGTAATGGCTA
TAAAAAAATTTCACAGTTCTTAGAAGAAGATATCAAACTACTCAACCGGAAACCTTATCAAGTACGTAATATCATCATGA
ACCCTAATTATTGCGGACGTGTGAGTAACAAATATGGCACTTTTGATAATATGTTCCCACCTATTATCAGTAAAGCTATG
TATAAAAAGGCTCAAGCAATACGAGTAAATAAACAAGTTCAGCGCACGCCTTCTGCTAACTTACTTAAACAAAAAATAAA
ATGTCCTTGTTGTCGCTCCACTCTTACAAATATGACAATTAGTAAAAAGCAACATACATTACGTTATTATGTCTGTCCTC
GAAATATGAATGAATCTCGTTTTGTCTGTGACTTCAAGGGTATAAATGCGCAACAACTAGAAGATCAAGTCTTAGCCATA
TGTAAAGACTTCTTTCAAAACAAACAAATCTATCCAAAAATAAATAACAAAATCAGACAACAACTCAAGCAACACCAACA
TGTAGAAACACAAAATAGTGTTACGCAAGCCCAACTGATAGATAAATTGGCTCAAGGTCTGATTGATGCTGAATCATTCA
GAAAACAGACCCAGTCGATGAATCAAAAGCGTAAAACCATACAATCAATAAGTGATATTCAGCTACAAACTTCACTACAA
AATGTGATACAGCAAAGTTTCACGTTAAACATGCTTTATCCCTATATTGATGAAATTTGCATTACTAAAAACAAAAACCT
AATTGGTATCTTTTTCACAAATGAGCCACTGAACATAGTAAATCAACAATCGCAATCATCGATAGCTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(169-248)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

72.16

100

0.722
  ccrA Staphylococcus aureus N315

69.265

100

0.693