Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   I7827_RS03130 Genome accession   NZ_CP065792
Coordinates   610889..612238 (-) Length   449 a.a.
NCBI ID   WP_075100307.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDK8D6P     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 605889..617238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7827_RS03095 (I7827_03095) - 606040..606327 (-) 288 WP_001824855.1 JAB domain-containing protein -
  I7827_RS03100 (I7827_03100) - 606356..606562 (-) 207 WP_001077283.1 hypothetical protein -
  I7827_RS03105 (I7827_03105) - 606564..607085 (-) 522 WP_000836008.1 DUF1643 domain-containing protein -
  I7827_RS03110 (I7827_03110) - 607104..607415 (-) 312 WP_000833212.1 DUF960 family protein -
  I7827_RS03115 (I7827_03115) - 607500..607850 (-) 351 WP_000171449.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I7827_RS03120 (I7827_03120) - 608417..609151 (-) 735 WP_044291471.1 glucose 1-dehydrogenase -
  I7827_RS03125 (I7827_03125) ccrB 609239..610867 (-) 1629 WP_198054455.1 cassette chromosome recombinase CcrB Machinery gene
  I7827_RS03130 (I7827_03130) ccrA 610889..612238 (-) 1350 WP_075100307.1 cassette chromosome recombinase CcrA Machinery gene
  I7827_RS03135 (I7827_03135) - 612417..612707 (-) 291 WP_107577895.1 hypothetical protein -
  I7827_RS03140 (I7827_03140) cch1 612798..614543 (-) 1746 WP_232345972.1 cassette chromosome replicative helicase -
  I7827_RS03145 (I7827_03145) ssb 614591..614881 (-) 291 WP_107556531.1 cassette chromosome ssDNA-binding protein -
  I7827_RS03150 (I7827_03150) - 615040..616584 (-) 1545 WP_135021269.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52320.03 Da        Isoelectric Point: 10.0368

>NTDB_id=514595 I7827_RS03130 WP_075100307.1 610889..612238(-) (ccrA) [Mammaliicoccus sciuri strain GDK8D6P]
MKQAIGYLRQSTTKQQSLTAQKQTIETLAKKYNIQHITFYSDKQSGRTDNRTGYQQVIERIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFHYYLQDYGYKKIAQYLEKDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTNI
YEQAQAIRSQKHTKRTPSDNQLQKKIKCPYCGSTLTNMTIRKKHHILRYYTCPQNMNASRFVCAFKGINAQVLETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIEAKYTLTQEQLIDKLAKGMIDAETFRNQSQSVLQKRKTISSISDTQLQTSLQ
KVIQKSFTLNMLYPFIDVIHITKNKELSGIYLKDEPLNIVNQAVQSSTA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=514595 I7827_RS03130 WP_075100307.1 610889..612238(-) (ccrA) [Mammaliicoccus sciuri strain GDK8D6P]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCACCGCACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATCCAACACATCACCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACGGGTT
ACCAACAAGTTATCGAACGCATTCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTAAATCGATTACATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAATATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAGCTCAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAAAATGGACTTAGAGAAAAGGCAAAACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACGGTTAAGGCAATATTCCATTACTACCTACAAGACTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAAAAGATGATAAATGTATTAATCGTAAACCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGACCAATATA
TACGAACAAGCTCAAGCAATACGGTCACAAAAACATACCAAACGGACTCCATCAGATAATCAACTTCAGAAGAAAATAAA
ATGTCCATATTGTGGATCAACCCTGACTAATATGACGATTAGAAAAAAGCACCATATATTACGTTATTATACTTGTCCTC
AAAATATGAATGCATCACGTTTTGTCTGTGCATTCAAAGGAATCAATGCGCAAGTATTAGAAACAAGTGTCTTAGCGACT
TGTCAGGACTTCTTTCAGAACCAACAGCTCTATTCAAAAATCAACCATACAATTCAACAACGACTCAAAAGACAAAGGGA
CATAGAAGCTAAATATACACTCACGCAAGAACAACTGATAGATAAGCTTGCCAAAGGTATGATTGATGCTGAAACATTCA
GGAATCAGTCTCAATCAGTGCTTCAAAAGCGCAAAACCATATCCTCAATAAGTGATACTCAGTTGCAAACATCACTACAA
AAGGTTATACAAAAAAGTTTCACGTTAAACATGTTATATCCCTTTATTGATGTCATTCATATTACTAAAAATAAAGAACT
AAGCGGCATCTATTTAAAAGATGAGCCACTAAACATTGTTAATCAAGCGGTACAATCATCAACTGCCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

81.208

99.555

0.808
  ccrA Staphylococcus aureus N315

72.829

100

0.728