Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   I7827_RS03125 Genome accession   NZ_CP065792
Coordinates   609239..610867 (-) Length   542 a.a.
NCBI ID   WP_198054455.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDK8D6P     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 604239..615867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7827_RS03095 (I7827_03095) - 606040..606327 (-) 288 WP_001824855.1 JAB domain-containing protein -
  I7827_RS03100 (I7827_03100) - 606356..606562 (-) 207 WP_001077283.1 hypothetical protein -
  I7827_RS03105 (I7827_03105) - 606564..607085 (-) 522 WP_000836008.1 DUF1643 domain-containing protein -
  I7827_RS03110 (I7827_03110) - 607104..607415 (-) 312 WP_000833212.1 DUF960 family protein -
  I7827_RS03115 (I7827_03115) - 607500..607850 (-) 351 WP_000171449.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I7827_RS03120 (I7827_03120) - 608417..609151 (-) 735 WP_044291471.1 glucose 1-dehydrogenase -
  I7827_RS03125 (I7827_03125) ccrB 609239..610867 (-) 1629 WP_198054455.1 cassette chromosome recombinase CcrB Machinery gene
  I7827_RS03130 (I7827_03130) ccrA 610889..612238 (-) 1350 WP_075100307.1 cassette chromosome recombinase CcrA Machinery gene
  I7827_RS03135 (I7827_03135) - 612417..612707 (-) 291 WP_107577895.1 hypothetical protein -
  I7827_RS03140 (I7827_03140) cch1 612798..614543 (-) 1746 WP_232345972.1 cassette chromosome replicative helicase -
  I7827_RS03145 (I7827_03145) ssb 614591..614881 (-) 291 WP_107556531.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62707.53 Da        Isoelectric Point: 9.7678

>NTDB_id=514594 I7827_RS03125 WP_198054455.1 609239..610867(-) (ccrB) [Mammaliicoccus sciuri strain GDK8D6P]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCQFHHFEVTDIYADRGISGKSMNRPALQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
IPLGYEKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMNQILEIVKSDKVINKVLERVNQENKVDIGALNHDIAYKQQQYD
EVHAKLDNLIKTIEDNPDLTTILKETIHKYETQLNDITNQINQLKQQQNQEKTSYNTKQLSAVLRRIFQNVESMDKSQLK
ALYLTVIDRIDIRKDEHRKKQFYVTLKLNHEITKQLFHNTPIDEVRLSTSSLFLSQTLYIHI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=514594 I7827_RS03125 WP_198054455.1 609239..610867(-) (ccrB) [Mammaliicoccus sciuri strain GDK8D6P]
ATGCAACAACTCAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCAACAGAAATGCAAAGTACAGAAGGTTATAGTAT
TGATGGTCAAATCAATCAGATTAGAGAATACTGTCAATTTCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAGTCTATGAACCGTCCTGCACTACAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGACTGGCACGTAATACATCAGACTTACTCAAAATTGTAGAAGATTTGCATAAACAAAATGTTGA
ATTTTTCAGTCTATCAGAACGTATGGAAGTTAATACGAGTAGCGGTAAGCTTATGTTACAAATACTTGCAAGCTTTTCTG
AATTCGAACGCAATAACATTGTCGAGAACGTATTCATGGGTCAAACCAGACGTGCACAAGAAGGATATTACCAAGGCAAT
ATTCCACTTGGCTATGAGAAAATTCCAGACAATAAACACGAACTCATGATAAACCAACATGAAGCGAATATCGTCAAATA
TATATTTGAGTCATATGCTAAAGGTCATGGATATCGGAAAATGGCTAACGCACTTAATCATAAAGGCTATGTCACTAAGA
AAGGTAATCCATTCAGTACATCAGCTATAGCTTATATTCTTTCCAATCCCTTCTACATTGGTAAAATACAATTTGCGAAA
TATAAGGATTGGAATGAAAAACGACGTAAAGGCCTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAGCAAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGACGTGATTGAGAAATACGTCATGAATCAAATACTCGAAATTGTCAAAAGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATCGCTTATAAACAACAACAATACGAT
GAAGTCCATGCGAAACTAGACAACTTGATTAAAACAATCGAAGATAATCCAGACTTAACAACAATACTCAAAGAAACAAT
CCATAAATATGAAACACAACTGAATGACATTACGAATCAAATTAATCAACTGAAGCAACAACAAAATCAAGAGAAAACAT
CATATAATACGAAACAACTATCCGCTGTTTTACGTCGCATATTTCAAAACGTAGAATCCATGGATAAATCACAACTCAAA
GCGTTATATCTCACAGTCATTGACCGAATAGATATTCGTAAAGACGAACATCGTAAAAAGCAATTCTATGTCACATTAAA
ACTCAATCATGAAATCACTAAACAACTCTTCCATAATACCCCTATCGACGAAGTGCGCCTCAGCACTTCGTCTTTATTTT
TATCTCAAACACTCTATATTCATATATAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-281)

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

84.133

100

0.841