Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I7827_RS02585 Genome accession   NZ_CP065792
Coordinates   497888..498415 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain GDK8D6P     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 486095..498415 497888..498415 within 0


Gene organization within MGE regions


Location: 486095..498415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7827_RS02495 (I7827_02495) - 486095..486442 (-) 348 WP_198054415.1 hypothetical protein -
  I7827_RS02500 (I7827_02500) - 486448..487017 (-) 570 WP_198054416.1 hypothetical protein -
  I7827_RS02505 (I7827_02505) - 487167..487496 (-) 330 WP_198054417.1 sigma factor-like helix-turn-helix DNA-binding protein -
  I7827_RS02510 (I7827_02510) - 487484..487960 (-) 477 WP_232345954.1 pathogenicity island protein -
  I7827_RS02515 (I7827_02515) - 487977..488447 (-) 471 WP_152291750.1 terminase small subunit -
  I7827_RS02520 (I7827_02520) - 488504..489130 (-) 627 WP_198054418.1 hypothetical protein -
  I7827_RS02525 (I7827_02525) - 489130..489495 (-) 366 WP_198054419.1 pathogenicity island protein -
  I7827_RS02530 (I7827_02530) - 489581..489904 (-) 324 WP_198054420.1 hypothetical protein -
  I7827_RS02535 (I7827_02535) - 490239..491903 (-) 1665 WP_198054421.1 DUF927 domain-containing protein -
  I7827_RS02540 (I7827_02540) - 491910..492761 (-) 852 WP_198054422.1 primase alpha helix C-terminal domain-containing protein -
  I7827_RS02545 (I7827_02545) - 493025..493312 (-) 288 WP_198054423.1 DUF1474 family protein -
  I7827_RS02550 (I7827_02550) - 493302..493709 (-) 408 WP_198054424.1 pathogenicity island protein -
  I7827_RS02555 (I7827_02555) - 493727..493999 (-) 273 WP_198054425.1 helix-turn-helix domain-containing protein -
  I7827_RS02560 (I7827_02560) - 494002..494241 (-) 240 WP_198054426.1 helix-turn-helix transcriptional regulator -
  I7827_RS02565 (I7827_02565) - 494398..495318 (+) 921 WP_198054427.1 helix-turn-helix domain-containing protein -
  I7827_RS02570 (I7827_02570) - 495324..496547 (+) 1224 WP_198054428.1 tyrosine-type recombinase/integrase -
  I7827_RS02575 (I7827_02575) - 496584..497369 (+) 786 WP_232345955.1 type II toxin-antitoxin system PemK/MazF family toxin -
  I7827_RS02580 (I7827_02580) rpsR 497586..497828 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  I7827_RS02585 (I7827_02585) ssbA 497888..498415 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=514590 I7827_RS02585 WP_025906200.1 497888..498415(-) (ssbA) [Mammaliicoccus sciuri strain GDK8D6P]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=514590 I7827_RS02585 WP_025906200.1 497888..498415(-) (ssbA) [Mammaliicoccus sciuri strain GDK8D6P]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537