Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SSUST1_RS00850 | Genome accession | NC_017950 |
| Coordinates | 134779..135732 (+) | Length | 317 a.a. |
| NCBI ID | WP_014735295.1 | Uniprot ID | - |
| Organism | Streptococcus suis ST1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 129779..140732
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSUST1_RS00810 (SSUST1_0137) | - | 129930..130880 (-) | 951 | WP_014735288.1 | S66 peptidase family protein | - |
| SSUST1_RS00815 (SSUST1_0138) | comGA | 130966..131917 (+) | 952 | Protein_123 | competence type IV pilus ATPase ComGA | - |
| SSUST1_RS00820 (SSUST1_0140) | comYB | 131829..132866 (+) | 1038 | WP_268739958.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SSUST1_RS00825 (SSUST1_0141) | comYC | 132868..133149 (+) | 282 | WP_014735290.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SSUST1_RS00830 (SSUST1_0142) | comGD | 133130..133537 (+) | 408 | WP_014735291.1 | competence type IV pilus minor pilin ComGD | - |
| SSUST1_RS00835 (SSUST1_0143) | comYE | 133509..133802 (+) | 294 | WP_024405248.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SSUST1_RS00840 (SSUST1_0144) | comGF/cglF | 133789..134223 (+) | 435 | WP_014735293.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SSUST1_RS00845 (SSUST1_0145) | comGG | 134201..134722 (+) | 522 | WP_014735294.1 | competence type IV pilus minor pilin ComGG | - |
| SSUST1_RS00850 (SSUST1_0146) | comYH | 134779..135732 (+) | 954 | WP_014735295.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SSUST1_RS00855 (SSUST1_0147) | - | 135782..136969 (+) | 1188 | WP_012775422.1 | acetate kinase | - |
| SSUST1_RS00860 (SSUST1_0148) | - | 137284..137835 (+) | 552 | WP_012774908.1 | folate family ECF transporter S component | - |
| SSUST1_RS00865 (SSUST1_0149) | - | 137891..139147 (+) | 1257 | WP_011921729.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| SSUST1_RS00870 (SSUST1_0150) | pepA | 139194..140255 (-) | 1062 | WP_014735296.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35730.93 Da Isoelectric Point: 4.4696
>NTDB_id=51459 SSUST1_RS00850 WP_014735295.1 134779..135732(+) (comYH) [Streptococcus suis ST1]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHEMDLVVNNNKTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDCLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHEMDLVVNNNKTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDCLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=51459 SSUST1_RS00850 WP_014735295.1 134779..135732(+) (comYH) [Streptococcus suis ST1]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGATGGACCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGATTCCATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGTCAGAAGG
AATTGGATTGCTTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCTGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGCCCAAAGGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGATGGACCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGATTCCATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGTCAGAAGG
AATTGGATTGCTTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCTGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGCCCAAAGGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.443 |
99.685 |
0.603 |
| comYH | Streptococcus mutans UA159 |
60.127 |
99.685 |
0.599 |