Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   I8N73_RS01905 Genome accession   NZ_CP065791
Coordinates   385111..385548 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM279     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 380111..390548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N73_RS01880 (I8N73_01880) - 381131..382267 (+) 1137 WP_015416779.1 zinc-dependent alcohol dehydrogenase -
  I8N73_RS01885 (I8N73_01885) - 382282..382716 (+) 435 WP_199022329.1 RDD family protein -
  I8N73_RS01890 (I8N73_01890) - 382788..383111 (+) 324 WP_144664490.1 YckD family protein -
  I8N73_RS01895 (I8N73_01895) - 383215..384651 (+) 1437 WP_113766610.1 glycoside hydrolase family 1 protein -
  I8N73_RS01900 (I8N73_01900) nin/comJ 384692..385090 (-) 399 WP_144664492.1 competence protein ComJ Regulator
  I8N73_RS01905 (I8N73_01905) nucA/comI 385111..385548 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  I8N73_RS01910 (I8N73_01910) hxlB 385906..386463 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  I8N73_RS01915 (I8N73_01915) hxlA 386460..387095 (-) 636 WP_095352416.1 3-hexulose-6-phosphate synthase -
  I8N73_RS01920 (I8N73_01920) - 387327..387689 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=514518 I8N73_RS01905 WP_003156588.1 385111..385548(-) (nucA/comI) [Bacillus velezensis strain LBUM279]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=514518 I8N73_RS01905 WP_003156588.1 385111..385548(-) (nucA/comI) [Bacillus velezensis strain LBUM279]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641