Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   I8N73_RS01900 Genome accession   NZ_CP065791
Coordinates   384692..385090 (-) Length   132 a.a.
NCBI ID   WP_144664492.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM279     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 379692..390090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N73_RS01875 (I8N73_01875) - 379864..381066 (+) 1203 WP_199022328.1 GTP-binding protein -
  I8N73_RS01880 (I8N73_01880) - 381131..382267 (+) 1137 WP_015416779.1 zinc-dependent alcohol dehydrogenase -
  I8N73_RS01885 (I8N73_01885) - 382282..382716 (+) 435 WP_199022329.1 RDD family protein -
  I8N73_RS01890 (I8N73_01890) - 382788..383111 (+) 324 WP_144664490.1 YckD family protein -
  I8N73_RS01895 (I8N73_01895) - 383215..384651 (+) 1437 WP_113766610.1 glycoside hydrolase family 1 protein -
  I8N73_RS01900 (I8N73_01900) nin/comJ 384692..385090 (-) 399 WP_144664492.1 competence protein ComJ Regulator
  I8N73_RS01905 (I8N73_01905) nucA/comI 385111..385548 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  I8N73_RS01910 (I8N73_01910) hxlB 385906..386463 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  I8N73_RS01915 (I8N73_01915) hxlA 386460..387095 (-) 636 WP_095352416.1 3-hexulose-6-phosphate synthase -
  I8N73_RS01920 (I8N73_01920) - 387327..387689 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14908.87 Da        Isoelectric Point: 4.7846

>NTDB_id=514517 I8N73_RS01900 WP_144664492.1 384692..385090(-) (nin/comJ) [Bacillus velezensis strain LBUM279]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSLPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=514517 I8N73_RS01900 WP_144664492.1 384692..385090(-) (nin/comJ) [Bacillus velezensis strain LBUM279]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTCATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCACTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75

100

0.75