Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLNZ_RS12175 Genome accession   NC_017949
Coordinates   2377598..2378089 (-) Length   163 a.a.
NCBI ID   WP_011836065.1    Uniprot ID   A2RNU7
Organism   Lactococcus cremoris subsp. cremoris NZ9000     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2372598..2383089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNZ_RS12175 (LLNZ_12545) comX 2377598..2378089 (-) 492 WP_011836065.1 sigma-70 family RNA polymerase sigma factor Regulator
  LLNZ_RS12180 (LLNZ_12550) ezrA 2378354..2380084 (-) 1731 WP_011836066.1 septation ring formation regulator EzrA -
  LLNZ_RS12185 (LLNZ_12555) tsf 2380289..2381317 (-) 1029 WP_011677206.1 translation elongation factor Ts -
  LLNZ_RS12190 (LLNZ_12560) rpsB 2381439..2382206 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19695.45 Da        Isoelectric Point: 6.1662

>NTDB_id=51443 LLNZ_RS12175 WP_011836065.1 2377598..2378089(-) (comX) [Lactococcus cremoris subsp. cremoris NZ9000]
MTYYLEENEFEGLFSGMKPIIRKLMKQIRIKAWDIEDYYQEGMIILHHLLEENHPSTNIYTKFKVKYHQHLIDELRHSYA
KKRLHDHFVGLDIYECSDWIDAGGSTPESELVFNHLLAEVYEGLSAHYQELLVRQMRGEELTRMERYRLREKIKNILFSR
DDD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=51443 LLNZ_RS12175 WP_011836065.1 2377598..2378089(-) (comX) [Lactococcus cremoris subsp. cremoris NZ9000]
ATGACATATTACCTGGAAGAAAATGAATTCGAAGGTTTATTTTCTGGAATGAAACCAATCATCAGAAAATTGATGAAACA
AATTCGAATCAAAGCATGGGACATAGAGGATTATTATCAAGAAGGAATGATTATTTTGCATCACCTTTTAGAAGAAAATC
ACCCATCCACTAATATTTATACAAAGTTCAAAGTAAAATATCATCAACATTTGATTGATGAACTACGCCATAGCTACGCC
AAAAAACGGCTTCATGACCATTTTGTAGGTCTGGACATTTATGAATGTTCGGACTGGATAGATGCAGGAGGAAGTACCCC
TGAAAGCGAGCTTGTGTTCAATCATCTTTTAGCAGAAGTTTATGAAGGATTGAGCGCCCACTATCAGGAATTACTCGTGC
GTCAAATGAGAGGAGAAGAACTCACGCGAATGGAACGCTATCGGCTAAGAGAAAAAATCAAAAATATACTATTTTCTCGA
GATGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RNU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

98.773

100

0.988
  comX Lactococcus lactis subsp. lactis strain DGCC12653

75.46

100

0.755

Multiple sequence alignment