Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STRR_RS06750 Genome accession   NZ_CP065788
Coordinates   1306762..1308255 (-) Length   497 a.a.
NCBI ID   WP_014608541.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain RR     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301762..1313255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRR_RS06720 (STRR_06680) - 1301892..1302269 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  STRR_RS06725 (STRR_06685) - 1302274..1302972 (+) 699 WP_023909821.1 ABC transporter ATP-binding protein -
  STRR_RS06730 (STRR_06690) - 1302984..1303769 (+) 786 WP_002951425.1 hypothetical protein -
  STRR_RS06735 (STRR_06695) amiF 1303819..1304748 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  STRR_RS06740 (STRR_06700) amiE 1304741..1305826 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STRR_RS06745 (STRR_06705) amiD 1305836..1306762 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STRR_RS06750 (STRR_06710) amiC 1306762..1308255 (-) 1494 WP_014608541.1 ABC transporter permease Regulator
  STRR_RS06755 (STRR_06715) amiA 1308317..1310284 (-) 1968 WP_347113471.1 peptide ABC transporter substrate-binding protein Regulator
  STRR_RS06760 (STRR_06720) - 1310640..1311890 (+) 1251 Protein_1290 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55649.53 Da        Isoelectric Point: 10.0972

>NTDB_id=514330 STRR_RS06750 WP_014608541.1 1306762..1308255(-) (amiC) [Streptococcus thermophilus strain RR]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=514330 STRR_RS06750 WP_014608541.1 1306762..1308255(-) (amiC) [Streptococcus thermophilus strain RR]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

99.799

100

0.998
  amiC Streptococcus thermophilus LMG 18311

99.396

100

0.994
  amiC Streptococcus salivarius strain HSISS4

97.183

100

0.972