Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KWY62_RS05455 Genome accession   NZ_CP079193
Coordinates   1091683..1093467 (-) Length   594 a.a.
NCBI ID   WP_202847676.1    Uniprot ID   -
Organism   Streptococcus suis strain ID41570     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086683..1098467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY62_RS05440 (KWY62_05440) - 1089266..1089430 (-) 165 WP_002943677.1 hypothetical protein -
  KWY62_RS05445 (KWY62_05445) obgE 1089981..1091294 (-) 1314 WP_032498978.1 GTPase ObgE -
  KWY62_RS05450 (KWY62_05450) - 1091498..1091626 (-) 129 WP_002935474.1 DUF4044 domain-containing protein -
  KWY62_RS05455 (KWY62_05455) uvrC 1091683..1093467 (-) 1785 WP_202847676.1 excinuclease ABC subunit UvrC Machinery gene
  KWY62_RS05460 (KWY62_05460) - 1093975..1094718 (+) 744 WP_029186612.1 ABC transporter ATP-binding protein -
  KWY62_RS05465 (KWY62_05465) - 1094715..1096325 (+) 1611 WP_024384422.1 hypothetical protein -
  KWY62_RS05470 (KWY62_05470) - 1096348..1096791 (-) 444 WP_002935466.1 VOC family protein -
  KWY62_RS05475 (KWY62_05475) ldcB 1096880..1097635 (-) 756 WP_044681910.1 LD-carboxypeptidase LdcB/DacB -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68305.41 Da        Isoelectric Point: 8.8002

>NTDB_id=514294 KWY62_RS05455 WP_202847676.1 1091683..1093467(-) (uvrC) [Streptococcus suis strain ID41570]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLMITRQIKKDDGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENMPSLSEYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGSVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDGLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAEKVKESLSSKDEI

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=514294 KWY62_RS05455 WP_202847676.1 1091683..1093467(-) (uvrC) [Streptococcus suis strain ID41570]
ATGAACGATTTGATCAAGCATAAGTTGGAGTTGCTGCCGGACAGTCCGGGTTGCTACCTCCATAAAAACAAGTACGGAAA
AATTATCTATGTGGGCAAGGCCAAAAACCTGCGCAATCGGGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCCTTGGTATCTGAAATTGCCGACTTTGAATTTATCGTGACAGATTCCAATATCGAGGCCCTCTTACTGGAAATCAAT
CTGATTCAGGAAAACAAGCCTCGCTATAACATCATGCTCAAGGATGACAAGTCTTATCCTTTTATCAAAATTACCAAGGA
ACGCCATCCACGGTTGATGATTACACGGCAGATAAAAAAAGATGACGGTCAGTATTTTGGACCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAATTGCTGGAACGCCTCTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTTTGGCCCATGGAGAAAACATGCCCAGCCTGTCTGAGTATGACAAGATGGCTAAGGAAGT
GGCCCAGTTCTTGACAGGGCATGATGATAAGATTGTCAAGGAAGTCCAGGACAAGATGAAAGCTGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCAGAATACCGAGATGTCCTGCAATCCATTTCCACCCTGCGGACCAAGCAACGTGTGATGGCTCAT
GACTTGCAAAATCGGGATGTCTTTGGCTACTATGTGGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGAAATGTCAATCTTTTTCCATACTACAATGATGCGGACGAAGACTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCAGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTCATCAAGCCCCAGCGTGGCGAGAAGAAGCAGCTCATCAATCTGGCGACCAAGAATGCGCGTGTCAG
TCTGGAGCAGAAGTTTAATCTCTTGGAGAAAAATCTGGAGAAGACCTACGGTTCTGTGGAGAATATCGGTCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCTTTTGACAACTCCAACATCATGGGGACCAGTCCTGTGTCGGCTATGGTGGTC
TTTGAAAATGGGGTGCCTAATAAAAAGGAATACCGCAAGTATAAGATTAAGACGGTGGAGGGGCCAGATGATTATGCATC
CATGCGGGAAGTTTTGCAGCGGCGGTACAGTCGGGTGCTGCGGGACGGTTTGACACCGCCTGATTTGATTATCATTGACG
GTGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTCATCGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAGACACACGAGTTGCTCTTTGGCAATCCGTTGGAAGTAGTTGAATTACCTCGCAATTCACAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAGGTGCACCGCTTTGCTATTGAGTTTCATCGTCAGGTTCGGTCAAAAAATT
CCTTCTCATCCAAATTGGACGGCATAGAAGGCTTGGGACCAAAACGCAAGCAGGCTTTGATGAAACACTTCAAATCAATT
GGCAATATCCAGTCGGCCAGTCTACAAGAAATTGCAGAAGCAGGAGTGCCGTATAAAGTAGCGGAAAAGGTCAAGGAAAG
CCTTTCTTCAAAGGATGAGATTTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(196-229)

Helix-hairpin-helix domain (HHH_5)

(538-588)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.728

99.832

0.766
  uvrC Streptococcus pneumoniae R6

76.391

99.832

0.763
  uvrC Streptococcus pneumoniae D39

76.391

99.832

0.763