Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   STMM8_RS07290 Genome accession   NZ_CP065787
Coordinates   1403574..1404608 (-) Length   344 a.a.
NCBI ID   WP_405385190.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM8     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1398574..1409608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM8_RS07265 (STMM8_07260) ilvD 1398826..1400544 (-) 1719 WP_024010047.1 dihydroxy-acid dehydratase -
  STMM8_RS07270 (STMM8_07265) - 1400657..1401838 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  STMM8_RS07280 (STMM8_07275) trmB 1402074..1402715 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STMM8_RS07285 (STMM8_07280) ccrZ 1402725..1403516 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  STMM8_RS07290 (STMM8_07285) pptB 1403574..1404608 (-) 1035 WP_405385190.1 ABC transporter permease Regulator
  STMM8_RS07295 (STMM8_07290) pptA 1404608..1405339 (-) 732 WP_002947523.1 ABC transporter ATP-binding protein Regulator
  STMM8_RS07300 (STMM8_07295) - 1405404..1405823 (+) 420 WP_002891660.1 HIT family protein -
  STMM8_RS07305 (STMM8_07300) - 1405820..1406119 (+) 300 WP_002947522.1 hypothetical protein -
  STMM8_RS07310 - 1406681..1406902 (-) 222 WP_002947520.1 hypothetical protein -
  STMM8_RS07315 (STMM8_07310) - 1406921..1407556 (-) 636 WP_022096674.1 DUF4230 domain-containing protein -
  STMM8_RS07320 - 1407575..1407700 (-) 126 WP_011681534.1 hypothetical protein -
  STMM8_RS07325 (STMM8_07315) - 1407912..1409077 (-) 1166 Protein_1388 IS256-like element IS1191 family transposase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40126.65 Da        Isoelectric Point: 10.5363

>NTDB_id=514276 STMM8_RS07290 WP_405385190.1 1403574..1404608(-) (pptB) [Streptococcus thermophilus strain MM8]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKEKKYTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVNNLKRLINQIVLVMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=514276 STMM8_RS07290 WP_405385190.1 1403574..1404608(-) (pptB) [Streptococcus thermophilus strain MM8]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGAGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCAGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGAGAAGAAATATA
CGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAACA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.965

100

0.98

  pptB Streptococcus salivarius strain HSISS4

92.442

100

0.924