Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KV381_RS15670 Genome accession   NZ_CP079114
Coordinates   3611742..3613163 (+) Length   473 a.a.
NCBI ID   WP_103536762.1    Uniprot ID   -
Organism   Streptomyces sp. WY228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3606742..3618163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS15655 (KV381_15655) - 3607563..3608513 (-) 951 WP_030087849.1 Ppx/GppA phosphatase family protein -
  KV381_RS15660 (KV381_15660) - 3608713..3609573 (+) 861 WP_030087851.1 hypothetical protein -
  KV381_RS15665 (KV381_15665) - 3609618..3611525 (-) 1908 WP_218785422.1 hypothetical protein -
  KV381_RS15670 (KV381_15670) radA/sms 3611742..3613163 (+) 1422 WP_103536762.1 DNA repair protein RadA Machinery gene
  KV381_RS15675 (KV381_15675) disA 3613244..3614368 (+) 1125 WP_006125491.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  KV381_RS15680 (KV381_15680) - 3614653..3615477 (-) 825 WP_234024694.1 hypothetical protein -
  KV381_RS15685 (KV381_15685) - 3615696..3616610 (+) 915 WP_030087860.1 A/G-specific adenine glycosylase -
  KV381_RS15690 (KV381_15690) - 3616772..3617443 (+) 672 WP_030087862.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49834.02 Da        Isoelectric Point: 8.4942

>NTDB_id=514189 KV381_RS15670 WP_103536762.1 3611742..3613163(+) (radA/sms) [Streptomyces sp. WY228]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGTIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRVLPRRSRQEAPQPRQEDNARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=514189 KV381_RS15670 WP_103536762.1 3611742..3613163(+) (radA/sms) [Streptomyces sp. WY228]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGCACCACCGCGGCGG
GCCGGGTCTCCACGGCGGCGCTGCCGATCGGCCAGGTCGACAGCCGTACGGCCACCGCCCGCTCGACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGGCTCGTGCCGGGCGCGGTCGTGCTGCTGGCCGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTGTACCTCGCCGCGGAGACCGATCTCTCCGCGGTG
CTCGGCCATCTGGACGCGGTGAAGCCCTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGAATGGCCCAGGTCCGGGAGGTCGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCCACGC
TGCTGGTCGGCCACGTCACCAAGGACGGCACCATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCGTCAAGAATCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGTCTCGCCGACCCCTCGGGCCTCTTCCTTACCCGTCGCGACGTTGCGGTGC
CGGGCACCTGCCTCACCGTGACGCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCACTCACCGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTACTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGTGTGAAGCTCACCGAGCCCGCCGCCGACC
TGGCCATCGCGCTCGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGGAGGGTCACCGGGGTGCAGCGGAGGCTGGCCGAGGCACACCGGCTGGGCTTCACCCACGCGCT
CGTTCCGACCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGATGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGTCAAGAGGCGCCGCAGCCTCGTCAGGAAGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

95.772

0.419
  radA Streptococcus mitis SK321

44.522

90.698

0.404
  radA Streptococcus pneumoniae Rx1

44.522

90.698

0.404
  radA Streptococcus pneumoniae D39

44.522

90.698

0.404
  radA Streptococcus pneumoniae R6

44.522

90.698

0.404
  radA Streptococcus pneumoniae TIGR4

44.522

90.698

0.404
  radA Streptococcus mitis NCTC 12261

44.522

90.698

0.404