Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   KV381_RS10205 Genome accession   NZ_CP079114
Coordinates   2359736..2360827 (-) Length   363 a.a.
NCBI ID   WP_030078059.1    Uniprot ID   A0ABW2M812
Organism   Streptomyces sp. WY228     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2354736..2365827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS10195 (KV381_10195) rcrP 2356059..2357792 (+) 1734 WP_030622149.1 ABC transporter ATP-binding protein Regulator
  KV381_RS10200 (KV381_10200) rcrQ 2357792..2359720 (+) 1929 WP_030622146.1 ABC transporter ATP-binding protein Regulator
  KV381_RS10205 (KV381_10205) rpoS 2359736..2360827 (-) 1092 WP_030078059.1 RNA polymerase sigma factor Regulator
  KV381_RS10210 (KV381_10210) dnaG 2361067..2362995 (-) 1929 WP_193463915.1 DNA primase -
  KV381_RS10215 (KV381_10215) - 2363089..2364348 (-) 1260 WP_218785090.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 40635.27 Da        Isoelectric Point: 6.0802

>NTDB_id=514178 KV381_RS10205 WP_030078059.1 2359736..2360827(-) (rpoS) [Streptomyces sp. WY228]
MQTRTVTTTTEPIAAIPAQHRALHHPETTAGPPGHAPEAVMVEATHLPEPPEPRNRADSGGPTSDLFRQYLREIGRIPLL
TAAEEVELARRVEAGLFAEERLAGTPDLDSRLAGDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAAELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLEDGR
PRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=514178 KV381_RS10205 WP_030078059.1 2359736..2360827(-) (rpoS) [Streptomyces sp. WY228]
GTGCAGACCCGGACCGTGACGACCACGACCGAGCCCATCGCGGCCATCCCGGCGCAGCACAGGGCCCTGCACCACCCGGA
GACCACAGCCGGCCCGCCCGGACACGCACCCGAGGCAGTCATGGTGGAAGCGACGCATCTCCCCGAACCGCCGGAGCCAC
GGAACCGGGCGGACTCCGGCGGCCCCACCTCCGATCTGTTCCGGCAGTATCTGCGCGAGATCGGCCGCATCCCGCTGCTC
ACCGCCGCCGAGGAGGTCGAGCTCGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAACGCCTCGCGGGCACCCCCGA
CCTCGACTCCCGCCTCGCCGGGGACCTGGACCGGCTGGTGGTGATGGGCCGCACCGCCAAACGCCGCCTCATCGAGGCCA
ACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGCTATGTGGGCCGCGGGCTGACCATGCTCGACCTGGTCCAGGAGGGGAAC
CTCGGGCTGATCCGGGCGGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCG
CCAGGCCATGTCCCGCGCGCTGGCCGACCAGGCCCGCACCATCCGCGTCCCGGTCCATGTGGTGGAGCTGATCAACCGCG
TCGTCCGGGTCCAGCGCCGGCTCCTCCAGGAACGCGGCGTCGAGCCGACCGCCGAGGACATCGCCGCGGAGCTGGACCTG
ACGCCCGAGCGGGTCACCGAAGTCCTCCGCCTGGCCCAGGAACCCGTCTCGCTGCACGCCCCCGTCGGCGAGGAGGACGA
CGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCCGCCGCCTTCCTGCTGCTGCGCGAGC
ACCTGGAGGCGGTCCTCTCCACCCTCGGCGAACGCGAACGCAAGGTCGTCCAACTGCGGTACGGCCTGGAGGACGGGCGG
CCCCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTGACACGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCAG
CAGGCTGCGGGACCACGCCTTCGCCGACCAGCTCCGCGGCTATCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(130-199)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(65-98)

Sigma-70, region 4 (Sigma70_r4)

(298-350)

Sigma-70 region 3 (Sigma70_r3)

(209-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.787

95.592

0.399