Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I8F58_RS08955 Genome accession   NZ_CP065773
Coordinates   1833286..1834968 (-) Length   560 a.a.
NCBI ID   WP_002323268.1    Uniprot ID   A0AAW8RFH1
Organism   Enterococcus faecium strain 16-164     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828286..1839968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8F58_RS08925 (I8F58_08935) ftsL 1829560..1829961 (-) 402 WP_002294542.1 cell division protein FtsL -
  I8F58_RS08930 (I8F58_08940) rsmH 1829966..1830925 (-) 960 WP_002286642.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  I8F58_RS08935 (I8F58_08945) mraZ 1830946..1831377 (-) 432 WP_002286645.1 division/cell wall cluster transcriptional repressor MraZ -
  I8F58_RS08940 (I8F58_08950) - 1831547..1831915 (-) 369 WP_002286647.1 DUF3397 domain-containing protein -
  I8F58_RS08945 (I8F58_08955) - 1832086..1833042 (+) 957 WP_002286649.1 magnesium transporter CorA family protein -
  I8F58_RS08950 (I8F58_08960) - 1833115..1833231 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  I8F58_RS08955 (I8F58_08965) recN 1833286..1834968 (-) 1683 WP_002323268.1 DNA repair protein RecN Machinery gene
  I8F58_RS08960 (I8F58_08970) - 1834986..1835435 (-) 450 WP_002286653.1 arginine repressor -
  I8F58_RS08965 (I8F58_08975) - 1835542..1836360 (-) 819 WP_105459682.1 TlyA family RNA methyltransferase -
  I8F58_RS08970 (I8F58_08980) - 1836369..1837259 (-) 891 WP_002286656.1 polyprenyl synthetase family protein -
  I8F58_RS08975 (I8F58_08985) - 1837261..1837485 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  I8F58_RS08980 (I8F58_08990) xseA 1837490..1838827 (-) 1338 WP_002294545.1 exodeoxyribonuclease VII large subunit -
  I8F58_RS08985 (I8F58_08995) - 1838828..1839682 (-) 855 WP_105459683.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63305.76 Da        Isoelectric Point: 4.6253

>NTDB_id=514140 I8F58_RS08955 WP_002323268.1 1833286..1834968(-) (recN) [Enterococcus faecium strain 16-164]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCVLEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRRIGSYLVDIQGQNEHQGLLQPESHLALLDRFGDVAFQQKKK
SYQQEYISYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVSELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDESRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLKLAKRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=514140 I8F58_RS08955 WP_002323268.1 1833286..1834968(-) (recN) [Enterococcus faecium strain 16-164]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATTATTATCGATGCTTTAGGTCTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGAGCAGAAAAATGTGTGCTTGAAGGGTTGTTTGAACTACCAAAACAAGAAGGATTCTCTGAACTGATG
GTTGAATTAGGGATCGAAACAGATGAGGACAATCTGATTGTTCGACGGGATATGTCCTTAACTGGAAAAAATGTTTGTCG
AGTGAATGGTCATATTATCACATTAGCTAATCTGAGAAGAATCGGCAGTTATTTAGTAGATATCCAAGGACAAAACGAAC
ATCAGGGACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGTAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATATCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGTTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGTGTTGGCTTGGCCGTTTCAGAACTGCAAGGGATCGCCCATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGCTGCAAGATGCAATCGGCGATATGAGTCGTCAGATTGATTTATTGG
AGTTAGATGAGAGTCGTTTAGAAGAAGTTACGCAACGTTTAGAATTAATCCGACAGTTGAAACGTAAATACGGCGAATCC
ATTGAGTCAATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTGAAAAGTCTGTATATGGAAAACACTGAGTTTGAGGTACGTTTCTTA
AAAGAAGAAAATAGACAATTGAATCATGATGGATTTGACCAAATCGAATTTTACATTACGACCAATCCAGGAGAGCCACT
GAAGCCTTTGGTGAAAGTCGCTTCTGGTGGCGAACTGTCTCGGATGTTGCTTGCTTTGAAAACTATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATTTTTGATGAAGTGGATACAGGTGTGAGCGGAAGAGTTGCACAGGCCATCGCAGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTGCCTCAAGTTGCTGCAGTCGCCGACTATCAATATTA
TATTGTGAAAGCAGTGATTGATGGACGTACGCAAACTTCTGTTTCAGAGTTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGTATGCTGGCTGGAAGTGAGATTACAAAACTCACACTCGAACATGCAAAAGAACTATTGAAACTCGCAAAAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.5