Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY99_RS01985 Genome accession   NZ_CP078118
Coordinates   368666..369193 (-) Length   175 a.a.
NCBI ID   WP_229690230.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363666..374193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY99_RS01970 (KWY99_01970) thiC 364983..366884 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  KWY99_RS01975 (KWY99_01975) - 367373..367765 (-) 393 Protein_367 pilin -
  KWY99_RS01980 (KWY99_01980) - 368260..368613 (-) 354 Protein_368 pilin -
  KWY99_RS01985 (KWY99_01985) pilE 368666..369193 (-) 528 WP_229690230.1 pilin Machinery gene
  KWY99_RS01990 (KWY99_01990) - 369146..369454 (+) 309 Protein_370 NAD(P)-dependent oxidoreductase -
  KWY99_RS01995 (KWY99_01995) metG 369529..371583 (-) 2055 WP_003696311.1 methionine--tRNA ligase -
  KWY99_RS02000 (KWY99_02000) glmS 371699..373537 (-) 1839 WP_003696308.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19102.46 Da        Isoelectric Point: 9.2614

>NTDB_id=513796 KWY99_RS01985 WP_229690230.1 368666..369193(-) (pilE) [Neisseria gonorrhoeae strain MS11]
MDQNRTRLHLPQFVFAGHYPNHGKWPENNGAAGVASPASDIKGKYVQSVTVANGVVTAQMKSDGVNKEIKNKKLSLWARR
EAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIETKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEID
TKHLPSTCRDKSSAE

Nucleotide


Download         Length: 528 bp        

>NTDB_id=513796 KWY99_RS01985 WP_229690230.1 368666..369193(-) (pilE) [Neisseria gonorrhoeae strain MS11]
ATTGATCAAAACCGCACCCGGCTTCATCTGCCGCAATTCGTTTTCGCCGGACATTACCCGAATCACGGCAAATGGCCGGA
AAACAACGGCGCTGCCGGCGTGGCATCCCCCGCCTCCGACATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAACG
GCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAGGCGT
GAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGT
CACCGGCAACGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCT
GCGGACAGCCGGTTACGCGCGACAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGAC
ACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(18-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

70.755

60.571

0.429
  pilE Neisseria gonorrhoeae strain FA1090

69.811

60.571

0.423