Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6G77_RS19745 Genome accession   NZ_CP065739
Coordinates   3829616..3830137 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus tropicus strain FDAARGOS_920     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3824616..3835137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G77_RS19725 (I6G77_19725) rplI 3825826..3826272 (-) 447 WP_000864230.1 50S ribosomal protein L9 -
  I6G77_RS19730 (I6G77_19730) - 3826269..3828242 (-) 1974 WP_001977512.1 DHH family phosphoesterase -
  I6G77_RS19735 (I6G77_19735) - 3828321..3829256 (-) 936 WP_033691411.1 YybS family protein -
  I6G77_RS19740 (I6G77_19740) rpsR 3829337..3829570 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  I6G77_RS19745 (I6G77_19745) ssbA 3829616..3830137 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  I6G77_RS19750 (I6G77_19750) rpsF 3830164..3830454 (-) 291 WP_001233780.1 30S ribosomal protein S6 -
  I6G77_RS19755 (I6G77_19755) ychF 3830646..3831746 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  I6G77_RS19760 (I6G77_19760) - 3831862..3832059 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  I6G77_RS19765 (I6G77_19765) - 3832080..3832961 (-) 882 WP_000365105.1 mechanosensitive ion channel family protein -
  I6G77_RS19770 (I6G77_19770) yyaC 3833220..3833816 (+) 597 WP_001977538.1 spore protease YyaC -
  I6G77_RS19775 (I6G77_19775) spo0J 3833837..3834688 (-) 852 WP_001051839.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=513787 I6G77_RS19745 WP_000981967.1 3829616..3830137(-) (ssbA) [Bacillus tropicus strain FDAARGOS_920]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=513787 I6G77_RS19745 WP_000981967.1 3829616..3830137(-) (ssbA) [Bacillus tropicus strain FDAARGOS_920]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACAAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCTGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382