Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KWY96_RS05515 Genome accession   NZ_CP078116
Coordinates   1068188..1068850 (-) Length   220 a.a.
NCBI ID   WP_025455984.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 88G285     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1063188..1073850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS05480 (KWY96_05480) dut 1063809..1064261 (-) 453 WP_003687923.1 dUTP diphosphatase -
  KWY96_RS05485 (KWY96_05485) - 1064427..1065134 (+) 708 Protein_1071 AzlC family ABC transporter permease -
  KWY96_RS05490 (KWY96_05490) - 1065131..1065439 (+) 309 WP_010951048.1 AzlD family protein -
  KWY96_RS05495 (KWY96_05495) pilL 1065509..1065982 (-) 474 WP_218422965.1 PilX family type IV pilin Machinery gene
  KWY96_RS05500 (KWY96_05500) pilK 1065984..1066595 (-) 612 WP_218422958.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY96_RS05505 (KWY96_05505) pilJ 1066574..1067542 (-) 969 WP_010359920.1 PilW family protein Machinery gene
  KWY96_RS05510 (KWY96_05510) pilV/pilI 1067539..1068156 (-) 618 WP_010359918.1 type IV pilus modification protein PilV Regulator
  KWY96_RS05515 (KWY96_05515) pilH 1068188..1068850 (-) 663 WP_025455984.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY96_RS05520 (KWY96_05520) dnaB 1069158..1070564 (-) 1407 WP_003701055.1 replicative DNA helicase -
  KWY96_RS05525 (KWY96_05525) - 1070728..1071309 (+) 582 WP_003698180.1 superoxide dismutase -
  KWY96_RS05530 (KWY96_05530) - 1071539..1072048 (-) 510 WP_218422959.1 isoprenylcysteine carboxyl methyltransferase family protein -
  KWY96_RS05535 (KWY96_05535) - 1072375..1072707 (-) 333 WP_003687908.1 hypothetical protein -
  KWY96_RS05540 (KWY96_05540) cysT 1072893..1073731 (+) 839 Protein_1082 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24465.93 Da        Isoelectric Point: 9.4068

>NTDB_id=513675 KWY96_RS05515 WP_025455984.1 1068188..1068850(-) (pilH) [Neisseria gonorrhoeae strain 88G285]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGRGMLAFGDKNGNKAYDGDEADVFLRSVVLNDTDDSRINYAFNHIAFGQIQPTAERVVWTFNQNGTFGYLSD
QNLKDNSKFVYSDGYIQIVLTDAKAVSVDEKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=513675 KWY96_RS05515 WP_025455984.1 1068188..1068850(-) (pilH) [Neisseria gonorrhoeae strain 88G285]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGTGA
TGAGGCGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTCAAATACAGCCGACTGCCGAACGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGTCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGTTTC
TGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.545

100

0.945