Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   KWY96_RS05505 Genome accession   NZ_CP078116
Coordinates   1066574..1067542 (-) Length   322 a.a.
NCBI ID   WP_010359920.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 88G285     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1061574..1072542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS05475 (KWY96_05475) dapC 1062544..1063731 (-) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -
  KWY96_RS05480 (KWY96_05480) dut 1063809..1064261 (-) 453 WP_003687923.1 dUTP diphosphatase -
  KWY96_RS05485 (KWY96_05485) - 1064427..1065134 (+) 708 Protein_1071 AzlC family ABC transporter permease -
  KWY96_RS05490 (KWY96_05490) - 1065131..1065439 (+) 309 WP_010951048.1 AzlD family protein -
  KWY96_RS05495 (KWY96_05495) pilL 1065509..1065982 (-) 474 WP_218422965.1 PilX family type IV pilin Machinery gene
  KWY96_RS05500 (KWY96_05500) pilK 1065984..1066595 (-) 612 WP_218422958.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY96_RS05505 (KWY96_05505) pilJ 1066574..1067542 (-) 969 WP_010359920.1 PilW family protein Machinery gene
  KWY96_RS05510 (KWY96_05510) pilV/pilI 1067539..1068156 (-) 618 WP_010359918.1 type IV pilus modification protein PilV Regulator
  KWY96_RS05515 (KWY96_05515) pilH 1068188..1068850 (-) 663 WP_025455984.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY96_RS05520 (KWY96_05520) dnaB 1069158..1070564 (-) 1407 WP_003701055.1 replicative DNA helicase -
  KWY96_RS05525 (KWY96_05525) - 1070728..1071309 (+) 582 WP_003698180.1 superoxide dismutase -
  KWY96_RS05530 (KWY96_05530) - 1071539..1072048 (-) 510 WP_218422959.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35304.35 Da        Isoelectric Point: 9.1852

>NTDB_id=513673 KWY96_RS05505 WP_010359920.1 1066574..1067542(-) (pilJ) [Neisseria gonorrhoeae strain 88G285]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKGDIVDSSNQTQSNLVKPGAKQENPLFSLKRSGMDKQLIPVAESADIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLAK
KIKRMDVQYIYVSGCPEDEDAGKEEQFKYTDRFDRSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANR
TL

Nucleotide


Download         Length: 969 bp        

>NTDB_id=513673 KWY96_RS05505 WP_010359920.1 1066574..1067542(-) (pilJ) [Neisseria gonorrhoeae strain 88G285]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGGCGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGTAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCGCAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGGATGTGCAGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATT
CAAATATACGGATAGATTCGACAGATCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

77.846

100

0.786