Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWZ00_RS12205 Genome accession   NZ_CP078115
Coordinates   1297163..1297825 (+) Length   220 a.a.
NCBI ID   WP_143824139.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O1G1370     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1292163..1302825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWZ00_RS06785 (KWZ00_06785) - 1292761..1294413 (-) 1653 WP_003697862.1 LTA synthase family protein -
  KWZ00_RS06790 (KWZ00_06790) gmhB 1294556..1295119 (+) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  KWZ00_RS06795 (KWZ00_06795) - 1295149..1295892 (+) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  KWZ00_RS06800 (KWZ00_06800) - 1295889..1296578 (+) 690 WP_047919168.1 SprT family zinc-dependent metalloprotease -
  KWZ00_RS12205 (KWZ00_06805) pilE 1297163..1297825 (+) 663 WP_143824139.1 pilin Machinery gene
  KWZ00_RS06810 (KWZ00_06810) pilE 1297921..1298337 (+) 417 WP_047918825.1 pilin Machinery gene
  KWZ00_RS06815 (KWZ00_06815) lpxC 1298787..1299710 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  KWZ00_RS06820 (KWZ00_06820) pilE 1299816..1300229 (+) 414 WP_218422830.1 pilin Machinery gene
  KWZ00_RS12035 - 1301209..1301711 (+) 503 Protein_1353 pilin -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23447.41 Da        Isoelectric Point: 10.0397

>NTDB_id=513642 KWZ00_RS12205 WP_143824139.1 1297163..1297825(+) (pilE) [Neisseria gonorrhoeae strain O1G1370]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVQRADNADNDAVTAAAAGKDTTNIDTKHLPSTCRDKSSAVCTKHHAP
ISNTSKKSAVAGYYPNHGKWPEDNTSAGVASPADKIKGKYVQKVEVAKGVVTAEMASTGVNKEIKDKKLSLWAKRQDGSV
KWFCGQPVTRGAGNAGKADDVTKAGNDNEKINTKHLPSTCRDAASAVCIETPPTAFYKNT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=513642 KWZ00_RS12205 WP_143824139.1 1297163..1297825(+) (pilE) [Neisseria gonorrhoeae strain O1G1370]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTCAGCGCGCCGACAACGCCGACAACGACGCCGTCACCGCCGCCGCCGCCGGCAAAGACA
CCACCAACATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATCTGCCGTTTGCACGAAACACCACGCGCCG
ATTTCAAACACTTCCAAAAAATCAGCCGTTGCCGGGTATTACCCGAATCACGGCAAATGGCCGGAAGACAACACTTCTGC
CGGCGTGGCATCCCCCGCCGACAAAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCG
AAATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTA
AAATGGTTCTGCGGACAGCCGGTTACGCGCGGCGCCGGCAACGCCGGCAAAGCCGACGACGTCACCAAAGCCGGCAACGA
CAACGAAAAAATCAACACCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGTTTGCATAGAAACACCACCTA
CGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(2-67)

Pilin (bacterial filament) (Pilin)

(85-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.207

55

0.414
  pilE Neisseria gonorrhoeae MS11

66.667

54.545

0.364