Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KWZ00_RS03915 Genome accession   NZ_CP078115
Coordinates   740089..740754 (-) Length   221 a.a.
NCBI ID   WP_047918984.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O1G1370     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 735089..745754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWZ00_RS03880 (KWZ00_03880) dut 735746..736198 (-) 453 WP_003701071.1 dUTP diphosphatase -
  KWZ00_RS03885 (KWZ00_03885) - 736364..737074 (+) 711 Protein_771 AzlC family ABC transporter permease -
  KWZ00_RS03890 (KWZ00_03890) - 737071..737379 (+) 309 WP_010359926.1 AzlD family protein -
  KWZ00_RS03895 (KWZ00_03895) pilL 737449..737922 (-) 474 WP_180364092.1 PilX family type IV pilin Machinery gene
  KWZ00_RS03900 (KWZ00_03900) pilK 737924..738532 (-) 609 WP_047918979.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWZ00_RS03905 (KWZ00_03905) pilJ 738511..739452 (-) 942 WP_047918978.1 PilW family protein Machinery gene
  KWZ00_RS03910 (KWZ00_03910) pilV/pilI 739449..740057 (-) 609 WP_047918977.1 type IV pilus modification protein PilV Regulator
  KWZ00_RS03915 (KWZ00_03915) pilH 740089..740754 (-) 666 WP_047918984.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWZ00_RS03920 (KWZ00_03920) dnaB 740909..742315 (-) 1407 WP_047918976.1 replicative DNA helicase -
  KWZ00_RS03925 (KWZ00_03925) - 742478..743059 (+) 582 WP_033910016.1 superoxide dismutase -
  KWZ00_RS03930 (KWZ00_03930) - 743289..743798 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  KWZ00_RS03935 (KWZ00_03935) - 744125..744457 (-) 333 WP_003687908.1 hypothetical protein -
  KWZ00_RS03940 (KWZ00_03940) cysT 744643..745479 (+) 837 WP_218422865.1 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24654.11 Da        Isoelectric Point: 9.1451

>NTDB_id=513596 KWZ00_RS03915 WP_047918984.1 740089..740754(-) (pilH) [Neisseria gonorrhoeae strain O1G1370]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPTQVKKDGTGN
NQCDLGKKEQGMLAFGDKNDNKAYDGDAADVFLRSVVLNDDIKDKRIDYTFNHITFGQTRSTADRVVWTFNQNGTFGYLS
DQNLKNDSKFVYSDGYIQIVLTDAKAVSVDEKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=513596 KWZ00_RS03915 WP_047918984.1 740089..740754(-) (pilH) [Neisseria gonorrhoeae strain O1G1370]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTACCCAAGTTAAAAAAGACGGTACGGGCAAC
AACCAATGCGACCTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGCAGCGTGGTATTGAATGATGATATCAAGGATAAGCGGATTGATTACACTTTCAATCATA
TCACTTTCGGTCAAACACGGTCGACTGCCGATCGTGTTGTTTGGACTTTTAACCAAAACGGGACATTCGGCTATTTGTCC
GATCAGAATCTCAAGAATGATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.425

100

0.864