Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KWZ00_RS03900 Genome accession   NZ_CP078115
Coordinates   737924..738532 (-) Length   202 a.a.
NCBI ID   WP_047918979.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O1G1370     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 732924..743532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWZ00_RS03870 (KWZ00_03870) yaaA 733552..734331 (-) 780 WP_003687925.1 peroxide stress protein YaaA -
  KWZ00_RS03875 (KWZ00_03875) dapC 734487..735674 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  KWZ00_RS03880 (KWZ00_03880) dut 735746..736198 (-) 453 WP_003701071.1 dUTP diphosphatase -
  KWZ00_RS03885 (KWZ00_03885) - 736364..737074 (+) 711 Protein_771 AzlC family ABC transporter permease -
  KWZ00_RS03890 (KWZ00_03890) - 737071..737379 (+) 309 WP_010359926.1 AzlD family protein -
  KWZ00_RS03895 (KWZ00_03895) pilL 737449..737922 (-) 474 WP_180364092.1 PilX family type IV pilin Machinery gene
  KWZ00_RS03900 (KWZ00_03900) pilK 737924..738532 (-) 609 WP_047918979.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWZ00_RS03905 (KWZ00_03905) pilJ 738511..739452 (-) 942 WP_047918978.1 PilW family protein Machinery gene
  KWZ00_RS03910 (KWZ00_03910) pilV/pilI 739449..740057 (-) 609 WP_047918977.1 type IV pilus modification protein PilV Regulator
  KWZ00_RS03915 (KWZ00_03915) pilH 740089..740754 (-) 666 WP_047918984.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWZ00_RS03920 (KWZ00_03920) dnaB 740909..742315 (-) 1407 WP_047918976.1 replicative DNA helicase -
  KWZ00_RS03925 (KWZ00_03925) - 742478..743059 (+) 582 WP_033910016.1 superoxide dismutase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22035.94 Da        Isoelectric Point: 7.5809

>NTDB_id=513593 KWZ00_RS03900 WP_047918979.1 737924..738532(-) (pilK) [Neisseria gonorrhoeae strain O1G1370]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=513593 KWZ00_RS03900 WP_047918979.1 737924..738532(-) (pilK) [Neisseria gonorrhoeae strain O1G1370]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

93.596

100

0.941