Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   I6G28_RS06865 Genome accession   NZ_CP065726
Coordinates   1376062..1378281 (-) Length   739 a.a.
NCBI ID   WP_167395582.1    Uniprot ID   A0A7T3BKX9
Organism   Neisseria cinerea strain FDAARGOS_871     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1371062..1383281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G28_RS06830 (I6G28_06830) lptE 1371106..1371585 (-) 480 WP_108043250.1 LPS assembly lipoprotein LptE -
  I6G28_RS06835 (I6G28_06835) pgeF 1371637..1372416 (-) 780 WP_111726518.1 peptidoglycan editing factor PgeF -
  I6G28_RS09380 - 1372453..1372707 (-) 255 Protein_1310 hypothetical protein -
  I6G28_RS06845 (I6G28_06845) - 1372722..1372859 (+) 138 WP_197913451.1 hypothetical protein -
  I6G28_RS06850 (I6G28_06850) - 1372963..1373910 (+) 948 WP_111726516.1 bile acid:sodium symporter family protein -
  I6G28_RS06855 (I6G28_06855) rluD 1374063..1375187 (-) 1125 WP_111726514.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6G28_RS06860 (I6G28_06860) comL 1375186..1375989 (+) 804 WP_111726512.1 outer membrane protein assembly factor BamD Machinery gene
  I6G28_RS06865 (I6G28_06865) comA 1376062..1378281 (-) 2220 WP_167395582.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I6G28_RS06870 (I6G28_06870) trpB 1378414..1379616 (-) 1203 WP_111726510.1 tryptophan synthase subunit beta -
  I6G28_RS06875 (I6G28_06875) - 1379745..1380143 (-) 399 WP_107859264.1 hypothetical protein -
  I6G28_RS06880 (I6G28_06880) - 1380148..1380801 (-) 654 WP_111726508.1 DNA glycosylase -
  I6G28_RS06885 (I6G28_06885) - 1380791..1381693 (-) 903 Protein_1319 DMT family transporter -
  I6G28_RS06890 (I6G28_06890) rsmA 1381932..1382717 (+) 786 WP_111726506.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80073.55 Da        Isoelectric Point: 9.9138

>NTDB_id=513592 I6G28_RS06865 WP_167395582.1 1376062..1378281(-) (comA) [Neisseria cinerea strain FDAARGOS_871]
MFRRWFLPCWVVGVAVSFALPVVPHWPFWLAAFAVFAVSARRFGFAGLMLCVLAGAAYGVFRTEAALSSQWRAEAVSGVP
LTVEVADMPSSDGRSVRFAAKAVDGKGRRFDLLLSDYKQREWTVGSKWRITARMRPVVGELNLRGLNREAWALSNGIGGV
GTVGADRVLLHDGSGWGIAVWRSRISRNWQQADTDGGLSDGIGLMRALSVGEQSALRPELWQAFRPLGLTHLVSISGLHV
TMVAVLFAWLVRRLFVCLPRLPSRPRVWILAGGCAGALCYALLAGFSVPTQRSVLMLAAFSWAWRNGRRSVWVAWWQALG
AVLLFDPLAVLGVGTWLSFGLVAALIWACSGRLGEGRRKTAVRGQWAASVLSVVLLGYLFASLPLISPLVNAVAILWFSW
VLTPLALLGSVVPFAPLQQAAAFLAEYTLRFLVWLAGVSPEFAVAAAPLPLLVLALCAALFVLLPRGLGLRPWSAAVLAG
FVFYRPEAVRGNSAEVIVWDAGQGLSVLVRTANHHLLFDTGTASAAQTGIVPSLNASGVRYLDRLVISHHDSDHDGGLQA
VRNIPDGGMYAGQPEFYEGARACTEQYWRWDGVDFEFLVPSERNESDDNGKSCVLRVTAGGAALLVTGDLDTKGEESLVG
KYGGNLYSQVLVLGHHGSNSSSSGVFLNTVAPEYAVSSSGYGNAYKHPTEAVQNRVRAHGIKLLRTDLSGALVFGLSQDG
VKAGRLKNYRFYWQRKPFE

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=513592 I6G28_RS06865 WP_167395582.1 1376062..1378281(-) (comA) [Neisseria cinerea strain FDAARGOS_871]
GTGTTCCGTCGTTGGTTTTTGCCGTGTTGGGTCGTCGGCGTGGCAGTTTCGTTCGCACTGCCGGTTGTACCGCATTGGCC
GTTTTGGTTGGCAGCTTTTGCGGTTTTTGCTGTGTCTGCAAGGCGGTTTGGATTTGCCGGTTTGATGTTGTGTGTTTTGG
CGGGTGCTGCCTACGGTGTGTTCAGGACGGAGGCGGCATTGTCTTCCCAATGGCGGGCGGAGGCGGTTTCGGGTGTGCCG
TTAACGGTGGAAGTGGCAGATATGCCGAGTTCGGACGGGCGGAGCGTCCGTTTTGCGGCAAAGGCCGTAGACGGCAAGGG
ACGGCGGTTCGACTTGTTGCTGTCTGATTATAAGCAACGTGAGTGGACGGTCGGGAGCAAGTGGCGGATAACGGCGCGCA
TGCGCCCTGTCGTAGGGGAATTGAACCTTAGGGGGCTGAACCGTGAGGCGTGGGCATTATCCAACGGGATAGGCGGCGTG
GGGACGGTCGGTGCGGACAGGGTTTTGCTGCATGACGGAAGCGGTTGGGGGATTGCGGTTTGGCGCAGCCGGATCAGCCG
CAATTGGCAGCAGGCGGATACGGACGGCGGGCTTTCAGACGGCATCGGGCTGATGCGCGCGTTGAGTGTGGGCGAACAGT
CGGCATTGCGCCCCGAATTGTGGCAGGCGTTCCGACCGTTGGGGCTGACTCATCTGGTCAGTATCTCGGGTTTGCACGTT
ACGATGGTGGCGGTACTGTTTGCGTGGCTGGTCAGGCGGTTGTTTGTTTGTCTGCCGCGCCTTCCTTCCCGGCCGCGCGT
GTGGATTTTGGCAGGCGGTTGTGCCGGTGCGCTGTGTTACGCGCTACTTGCGGGTTTTTCCGTACCGACGCAGCGCAGCG
TTTTGATGTTGGCGGCATTCTCGTGGGCATGGCGTAATGGCAGGCGTTCGGTTTGGGTGGCATGGTGGCAGGCTTTGGGT
GCCGTTTTGTTGTTTGACCCTTTAGCGGTTTTAGGTGTCGGTACCTGGCTGTCTTTCGGTTTGGTCGCAGCTTTGATATG
GGCGTGTTCGGGGCGGCTGGGTGAAGGTAGGCGGAAAACCGCCGTGCGCGGACAGTGGGCGGCTTCGGTGTTGTCGGTGG
TTTTGCTGGGCTATCTGTTTGCCTCTCTGCCTTTAATCAGCCCTTTGGTCAATGCGGTGGCGATACTGTGGTTTTCGTGG
GTTCTGACGCCGCTGGCATTGCTGGGTTCGGTCGTGCCGTTTGCGCCGCTTCAGCAGGCGGCAGCATTCTTGGCGGAATA
CACTTTGCGGTTTTTGGTATGGCTTGCCGGCGTGTCGCCGGAGTTTGCCGTTGCTGCCGCACCTTTGCCGCTGTTGGTTT
TGGCATTATGCGCCGCCTTGTTTGTCCTTTTGCCGCGCGGTTTGGGTTTGCGTCCGTGGTCGGCGGCGGTTCTGGCTGGA
TTTGTGTTTTACCGTCCTGAGGCGGTACGTGGAAACAGTGCGGAAGTCATCGTTTGGGATGCGGGTCAGGGTTTGTCGGT
GCTGGTACGGACGGCAAATCATCATCTTTTGTTTGACACCGGAACTGCATCGGCGGCGCAGACGGGGATTGTGCCGAGCC
TGAATGCGTCGGGCGTACGGTATTTGGACAGGTTGGTGATTTCCCACCATGACAGCGATCATGATGGCGGTTTGCAGGCG
GTGAGGAATATTCCTGATGGCGGAATGTATGCTGGACAGCCGGAATTTTATGAGGGCGCGCGGGCCTGTACGGAGCAGTA
TTGGCGGTGGGACGGCGTGGATTTCGAGTTTTTGGTGCCGTCTGAACGCAATGAGTCGGACGACAACGGGAAAAGCTGTG
TACTCCGCGTAACGGCCGGCGGTGCGGCTTTGCTGGTAACCGGCGATTTGGATACGAAGGGTGAGGAAAGCCTGGTCGGC
AAGTATGGCGGCAACCTGTACAGCCAGGTGTTGGTGCTGGGGCATCACGGCAGTAATTCATCATCTTCAGGCGTGTTCCT
GAATACGGTTGCACCCGAATATGCTGTTTCATCCAGCGGTTATGGCAATGCCTACAAACATCCGACCGAGGCGGTGCAGA
ACCGTGTCCGTGCACACGGCATCAAGTTGTTGCGGACGGATTTGTCGGGTGCGCTGGTATTTGGTTTGAGTCAAGATGGT
GTGAAGGCAGGTCGTCTCAAAAATTATCGGTTTTATTGGCAGAGAAAGCCGTTTGAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(500-668)

Competence protein (Competence)

(208-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3BKX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

87.009

100

0.87