Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   KWY94_RS07170 Genome accession   NZ_CP078113
Coordinates   1350585..1352330 (-) Length   581 a.a.
NCBI ID   WP_218461066.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O2D156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1345585..1357330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY94_RS07150 (KWY94_07150) lon 1345595..1348057 (-) 2463 WP_003691187.1 endopeptidase La -
  KWY94_RS07155 (KWY94_07155) - 1348309..1348764 (+) 456 Protein_1381 methyltransferase -
  KWY94_RS07160 (KWY94_07160) - 1348897..1349859 (-) 963 WP_218461159.1 IS110 family transposase -
  KWY94_RS07165 (KWY94_07165) - 1349867..1350513 (+) 647 Protein_1383 methyltransferase -
  KWY94_RS07170 (KWY94_07170) recD 1350585..1352330 (-) 1746 WP_218461066.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KWY94_RS07175 (KWY94_07175) lolD 1352397..1353092 (-) 696 WP_003688655.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KWY94_RS07180 (KWY94_07180) - 1353085..1354332 (-) 1248 WP_003691197.1 lipoprotein-releasing ABC transporter permease subunit -
  KWY94_RS07185 (KWY94_07185) - 1354558..1354836 (+) 279 WP_003688659.1 hypothetical protein -
  KWY94_RS07190 (KWY94_07190) recR 1354892..1355509 (-) 618 WP_003688660.1 recombination mediator RecR Machinery gene
  KWY94_RS07195 (KWY94_07195) - 1355576..1357114 (-) 1539 WP_003695299.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63113.91 Da        Isoelectric Point: 5.8825

>NTDB_id=513480 KWY94_RS07170 WP_218461066.1 1350585..1352330(-) (recD) [Neisseria gonorrhoeae strain O2D156]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPLVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=513480 KWY94_RS07170 WP_218461066.1 1350585..1352330(-) (recD) [Neisseria gonorrhoeae strain O2D156]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCTCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae MS11

99.656

100

0.997
  recD Neisseria gonorrhoeae strain FA1090

99.484

100

0.995