Detailed information NTG0513475

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: I6G34_RS17550
• Genome accession: NZ_CP065720
• Coordinates: 3722972..3725197 (-)
• Length: 741 a.a.
• NCBI ID: WP_102840161.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain FDAARGOS_877
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3717972..3730197

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G34_RS17515 (I6G34_17515)	murB	3718362..3719381 (-)	1020	WP_102840164.1	UDP-N-acetylmuramate dehydrogenase	-
I6G34_RS17520 (I6G34_17520)	-	3719378..3719845 (-)	468	WP_014597103.1	low molecular weight protein-tyrosine-phosphatase	-
I6G34_RS17525 (I6G34_17525)	kdsB	3719847..3720611 (-)	765	WP_102840163.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
I6G34_RS17530 (I6G34_17530)	-	3720608..3720793 (-)	186	WP_011913743.1	Trm112 family protein	-
I6G34_RS17535 (I6G34_17535)	lpxK	3720839..3721843 (-)	1005	WP_102840162.1	tetraacyldisaccharide 4'-kinase	-
I6G34_RS17540 (I6G34_17540)	-	3721843..3722271 (-)	429	WP_063539898.1	biopolymer transporter ExbD	-
I6G34_RS17545 (I6G34_17545)	-	3722268..3722900 (-)	633	WP_063539899.1	MotA/TolQ/ExbB proton channel family protein	-
I6G34_RS17550 (I6G34_17550)	comA	3722972..3725197 (-)	2226	WP_102840161.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
I6G34_RS17555 (I6G34_17555)	-	3725344..3725859 (+)	516	WP_063539900.1	DUF2062 domain-containing protein	-
I6G34_RS17560 (I6G34_17560)	-	3725872..3727116 (-)	1245	WP_102840160.1	lipoprotein-releasing ABC transporter permease subunit	-
I6G34_RS17565 (I6G34_17565)	lolD	3727116..3727805 (-)	690	WP_063539901.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
I6G34_RS17570 (I6G34_17570)	-	3727813..3729060 (-)	1248	WP_102840158.1	lipoprotein-releasing ABC transporter permease subunit	-
I6G34_RS17575 (I6G34_17575)	-	3729094..3729729 (+)	636	WP_102840157.1	PilZ domain-containing protein	-
I6G34_RS17580 (I6G34_17580)	-	3729733..3730041 (+)	309	WP_102840156.1	phosphodiesterase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80861.35 Da
• Isoelectric Point: 9.8352

>NTDB_id=513475 I6G34_RS17550 WP_102840161.1 3722972..3725197(-) (comA) [Stutzerimonas frequens strain FDAARGOS_877]
MRTWMLALAAGLVLPRFLPALPAQWFCAALAAVGLLLLLRVRWVAPGLFLLGLSWACYQSQSAIDDRLPAPMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSKVRLSWYDGPLLQAGERWRLAARLKRPHGMVNPHSFDYEAWLLARRIGAT
GTIKAGERLTASRASDGWRDRLRARLMAVPASDRQGAIAALVVGDDSGLSRGDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGVWPRWLPWLPWACGLALSGALAYGWLAGFEVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWRWWKALTRAQWAATLGLLPLLLALGLPISASGPLANLLAVPWVSLAVPF
ALLGTLLLPLGGAGEALLSMVGFSLALLFDVLAAIASWQPAWIAVGLPPWALAMIGLGVLLLLLPAGIPLRSLGFVLLLP
LAFPPRVEVPEGRAQVWVLDVGQGLAVLVRTREHALLYDAGPKQGEFDTGERVVVPSLRTLGASRLDLLLLSHADNDHSG
GAEAVQRLLRVERVVSGEPSRHAPDLGAERCESGSAWQWNDVRFSLWQWQAAQDSNQQSCVLQVEANGERILLTGDIDQS
AEQAWLASEQQMSSHWLLLPHHGSRSSSSEPFLRGVAAQAALISRSLHNPFGHPHPSVTARLEAFDIKAYDTALHGAIRI
DLGGFSPPELQRSQRRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=513475 I6G34_RS17550 WP_102840161.1 3722972..3725197(-) (comA) [Stutzerimonas frequens strain FDAARGOS_877]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGCCTGGTCCTGCCACGCTTCCTTCCAGCCTTGCCCGCGCAATGGTTCTG
TGCGGCGCTGGCGGCTGTCGGACTGTTGCTGCTGCTGCGCGTCCGCTGGGTGGCGCCAGGCCTGTTTCTGCTGGGCTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGGTTGCCAGCGCCCATGGACGGTCGCACGTTCTGGATTGAG
GGGCGGGTAGTGGGGTTGCCCAGCCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCCAATCGCGCCATGCCGG
GTTGCCATCGAAGGTGCGGCTGTCCTGGTATGACGGTCCGCTGCTACAAGCCGGCGAGCGCTGGCGGCTGGCGGCGCGAC
TGAAACGGCCACATGGCATGGTCAACCCGCATTCCTTCGATTACGAAGCCTGGTTGCTGGCGCGACGTATCGGCGCCACC
GGCACGATCAAGGCGGGTGAGCGCCTAACGGCGTCGAGGGCAAGCGACGGATGGCGCGATCGGCTTCGGGCGCGGCTCAT
GGCCGTTCCGGCATCCGATCGGCAGGGCGCCATCGCGGCACTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGGCGACT
GGCAGGTGCTGCAGGACACCGGCACCGTCCACCTGATGGTCATCTCCGGGCAGCACATCGGCATGTTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGCTCGCCTGGGCGTGTGGCCGCGGTGGTTGCCATGGTTGCCTTGGGCGTGCGGGCTGGC
GTTAAGCGGTGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGGTTGCGCTTTCGCCATCTGGGCGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCCCTGGTGACATTGCAGCCCGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGTTCATGGCGCTGGTGGAAGGCCCTGACCCGGGCGCAGTGGGCGGCCACCCTCGGCCTGCTTCCGCTGTTGCTCG
CCCTGGGGCTGCCGATAAGCGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTGCCTTGGGTGAGTCTCGCCGTGCCCTTT
GCGTTGCTTGGTACGCTGCTGCTGCCGCTGGGTGGGGCTGGCGAAGCGTTGCTGTCGATGGTGGGCTTTTCGCTGGCACT
ACTTTTCGATGTGCTGGCAGCGATTGCGTCGTGGCAGCCCGCCTGGATTGCGGTCGGCCTGCCGCCCTGGGCTCTGGCGA
TGATCGGGCTGGGTGTGCTGTTGCTGTTGCTGCCAGCCGGTATTCCGCTGCGTTCGCTGGGCTTTGTGCTGTTGTTGCCG
CTGGCATTCCCGCCTCGTGTCGAGGTCCCGGAGGGCCGAGCGCAGGTCTGGGTGCTGGATGTGGGCCAGGGCCTGGCGGT
GCTGGTGCGCACCCGCGAGCATGCACTGCTTTACGATGCCGGGCCGAAGCAGGGCGAGTTCGACACAGGCGAGCGGGTGG
TGGTCCCATCGCTCCGCACCCTTGGCGCGAGCCGGTTGGACCTGCTGTTGCTTAGCCATGCCGATAATGATCATTCGGGC
GGTGCGGAGGCGGTCCAGCGGCTGCTCCGGGTCGAGCGGGTGGTCAGTGGCGAGCCGTCTCGCCACGCGCCGGATCTGGG
CGCCGAACGTTGCGAAAGCGGCAGCGCTTGGCAATGGAACGATGTGCGCTTCAGTCTGTGGCAATGGCAGGCGGCGCAGG
ACAGCAACCAGCAGTCCTGCGTGCTGCAAGTCGAGGCCAACGGTGAGCGAATCCTGCTCACCGGCGACATCGACCAGTCC
GCCGAGCAGGCTTGGCTGGCAAGTGAGCAGCAGATGTCATCGCACTGGCTGCTGCTGCCCCATCACGGCAGCCGCAGCTC
CTCGTCGGAGCCGTTTCTGCGTGGCGTGGCCGCGCAAGCCGCGCTGATCTCGCGAAGTCTGCACAATCCGTTCGGCCACC
CGCACCCGAGCGTGACCGCGCGGCTCGAGGCGTTCGATATCAAGGCCTACGACACCGCGTTGCATGGCGCCATCCGGATC
GATCTGGGCGGTTTTTCGCCGCCAGAGCTGCAACGCTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (201-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-168)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-653)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.246	96.356	0.638
comA	Ralstonia pseudosolanacearum GMI1000	36.198	100	0.375