Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   I6G39_RS08135 Genome accession   NZ_CP065712
Coordinates   1660500..1661063 (+) Length   187 a.a.
NCBI ID   WP_059106497.1    Uniprot ID   A0AAP8PQ38
Organism   Staphylococcus auricularis strain FDAARGOS_882     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655500..1666063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G39_RS08100 (I6G39_08100) - 1655943..1656494 (-) 552 WP_059106504.1 GNAT family N-acetyltransferase -
  I6G39_RS08105 (I6G39_08105) - 1656707..1657165 (-) 459 WP_059106503.1 N-acetylmuramoyl-L-alanine amidase family protein -
  I6G39_RS08110 (I6G39_08110) - 1657277..1657657 (-) 381 WP_059106502.1 holin family protein -
  I6G39_RS08115 (I6G39_08115) - 1657955..1658557 (-) 603 WP_059106501.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  I6G39_RS08120 (I6G39_08120) - 1658562..1658747 (-) 186 WP_059106500.1 DUF2187 family protein -
  I6G39_RS08125 (I6G39_08125) - 1658947..1659933 (+) 987 WP_059106499.1 lipoate--protein ligase -
  I6G39_RS08130 (I6G39_08130) - 1660031..1660249 (-) 219 WP_059106498.1 IDEAL domain-containing protein -
  I6G39_RS08135 (I6G39_08135) comK/comK1 1660500..1661063 (+) 564 WP_059106497.1 competence protein ComK Regulator
  I6G39_RS08150 (I6G39_08150) - 1661801..1662709 (+) 909 WP_059106496.1 DUF2268 domain-containing protein -
  I6G39_RS08155 (I6G39_08155) - 1662786..1664294 (-) 1509 WP_059106495.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  I6G39_RS08160 (I6G39_08160) - 1664454..1665812 (-) 1359 WP_059106494.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22060.42 Da        Isoelectric Point: 9.4659

>NTDB_id=513411 I6G39_RS08135 WP_059106497.1 1660500..1661063(+) (comK/comK1) [Staphylococcus auricularis strain FDAARGOS_882]
MNFQYVIKQGDMALIPSESVHDMFERTTVLKYNDTPLTVKERTQKIIDRSCRFYGSTYAYKKEDTIRITGITSKPPLLFT
PLFPTYFFPTHSDRKQENAWVNIHYIESIKPLKDRKCKITFVDKQTLTLNVSAHSINHQFLNTVFYYYMMDRLARVTTFD
PDAPIDYSKPQLNIYEALAKYSILEKK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=513411 I6G39_RS08135 WP_059106497.1 1660500..1661063(+) (comK/comK1) [Staphylococcus auricularis strain FDAARGOS_882]
ATGAATTTCCAATATGTCATTAAACAGGGAGATATGGCTTTAATCCCTAGTGAATCAGTCCACGATATGTTTGAAAGGAC
TACCGTATTAAAGTATAACGATACGCCATTAACCGTCAAAGAACGTACGCAAAAGATCATTGACCGCTCTTGCCGTTTTT
ACGGTAGCACCTACGCCTACAAAAAAGAAGATACGATTCGTATTACCGGCATCACTAGTAAACCACCGTTATTATTTACA
CCTCTATTTCCTACTTATTTCTTCCCTACTCACTCAGACCGAAAGCAAGAAAACGCGTGGGTTAATATTCACTACATTGA
ATCGATTAAACCACTTAAAGATAGAAAATGTAAAATCACTTTTGTCGATAAACAAACATTAACGCTCAACGTCTCAGCAC
ACAGCATCAATCACCAATTCCTCAACACTGTCTTCTATTACTATATGATGGACCGTCTCGCCCGCGTCACGACTTTTGAC
CCCGATGCTCCCATTGACTATTCCAAGCCTCAACTTAATATTTACGAAGCGCTAGCCAAATACTCAATATTAGAGAAAAA
GTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

54.098

97.861

0.529
  comK/comK1 Staphylococcus aureus N315

54.098

97.861

0.529