Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G41_RS09585 Genome accession   NZ_CP065710
Coordinates   1854398..1854817 (-) Length   139 a.a.
NCBI ID   WP_002507087.1    Uniprot ID   A0A1E5TFZ6
Organism   Staphylococcus equorum strain FDAARGOS_884     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1849398..1859817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G41_RS09560 (I6G41_09560) thiE 1849916..1850554 (-) 639 WP_002507092.1 thiamine phosphate synthase -
  I6G41_RS09565 (I6G41_09565) thiM 1850554..1851345 (-) 792 WP_037539469.1 hydroxyethylthiazole kinase -
  I6G41_RS09570 (I6G41_09570) thiD 1851338..1852159 (-) 822 WP_002507090.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I6G41_RS09575 (I6G41_09575) tenA 1852152..1852841 (-) 690 WP_002507089.1 thiaminase II -
  I6G41_RS09580 (I6G41_09580) - 1853234..1853914 (-) 681 WP_002507088.1 transglycosylase family protein -
  I6G41_RS09585 (I6G41_09585) ssb 1854398..1854817 (-) 420 WP_002507087.1 single-stranded DNA-binding protein Machinery gene
  I6G41_RS09590 (I6G41_09590) - 1855008..1855448 (+) 441 WP_002507086.1 YwpF-like family protein -
  I6G41_RS09595 (I6G41_09595) fabZ 1855517..1855957 (-) 441 WP_002507085.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6G41_RS09600 (I6G41_09600) murA 1856015..1857280 (-) 1266 WP_002507084.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6G41_RS09605 (I6G41_09605) - 1857387..1857620 (-) 234 WP_002507083.1 DUF1146 family protein -
  I6G41_RS09610 (I6G41_09610) - 1857943..1858347 (-) 405 WP_002507082.1 F0F1 ATP synthase subunit epsilon -
  I6G41_RS09615 (I6G41_09615) atpD 1858367..1859779 (-) 1413 WP_197910797.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16259.49 Da        Isoelectric Point: 4.8624

>NTDB_id=513345 I6G41_RS09585 WP_002507087.1 1854398..1854817(-) (ssb) [Staphylococcus equorum strain FDAARGOS_884]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSELYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=513345 I6G41_RS09585 WP_002507087.1 1854398..1854817(-) (ssb) [Staphylococcus equorum strain FDAARGOS_884]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAACTTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5TFZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

61.594

99.281

0.612
  ssb Staphylococcus aureus MW2

60.87

99.281

0.604