Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6G42_RS00505 Genome accession   NZ_CP065707
Coordinates   112381..113307 (-) Length   308 a.a.
NCBI ID   WP_000103692.1    Uniprot ID   A0A081R278
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 107381..118307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS00485 (I6G42_00485) trkA 107484..108833 (+) 1350 WP_038804564.1 Trk system potassium transporter TrkA -
  I6G42_RS00490 (I6G42_00490) - 108837..110276 (+) 1440 WP_038804565.1 TrkH family potassium uptake protein -
  I6G42_RS00495 (I6G42_00495) amiF 110365..111294 (-) 930 WP_038804566.1 ATP-binding cassette domain-containing protein Regulator
  I6G42_RS00500 (I6G42_00500) amiE 111305..112372 (-) 1068 WP_038804567.1 ABC transporter ATP-binding protein Regulator
  I6G42_RS00505 (I6G42_00505) amiD 112381..113307 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  I6G42_RS00510 (I6G42_00510) amiC 113307..114803 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  I6G42_RS00515 (I6G42_00515) amiA 114870..116849 (-) 1980 WP_038804568.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34667.68 Da        Isoelectric Point: 9.0162

>NTDB_id=513253 I6G42_RS00505 WP_000103692.1 112381..113307(-) (amiD) [Streptococcus oralis strain FDAARGOS_885]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=513253 I6G42_RS00505 WP_000103692.1 112381..113307(-) (amiD) [Streptococcus oralis strain FDAARGOS_885]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAGTTTCTAAAGAAAAAATCAACAGTCTTTATGCTAGGAATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTCTCTGCTCGT
TTTATCAAGCCCAATGCTGAGCATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGGGC
GCGTAACTCTATCCTCATCTCTGTCATTGCAACTTTTATCAACCTTGTGATTGGGGTTATTGTTGGTGGAATTTGGGGAA
TTTCAAAATCCGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATCGTC
TTGACTTACTCGATTGGCGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATCGTTAAAAACATCATGCCACAATTAGTATCCGTTATTGTTTCTACGATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTACCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCGTTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818