Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6G42_RS00495 Genome accession   NZ_CP065707
Coordinates   110365..111294 (-) Length   309 a.a.
NCBI ID   WP_038804566.1    Uniprot ID   A0A7T3DZ59
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 105365..116294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS00475 (I6G42_00475) - 105484..106047 (-) 564 WP_038804562.1 ECF transporter S component -
  I6G42_RS00480 (I6G42_00480) - 106580..107083 (-) 504 WP_038804563.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  I6G42_RS00485 (I6G42_00485) trkA 107484..108833 (+) 1350 WP_038804564.1 Trk system potassium transporter TrkA -
  I6G42_RS00490 (I6G42_00490) - 108837..110276 (+) 1440 WP_038804565.1 TrkH family potassium uptake protein -
  I6G42_RS00495 (I6G42_00495) amiF 110365..111294 (-) 930 WP_038804566.1 ATP-binding cassette domain-containing protein Regulator
  I6G42_RS00500 (I6G42_00500) amiE 111305..112372 (-) 1068 WP_038804567.1 ABC transporter ATP-binding protein Regulator
  I6G42_RS00505 (I6G42_00505) amiD 112381..113307 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  I6G42_RS00510 (I6G42_00510) amiC 113307..114803 (-) 1497 WP_000759921.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35042.27 Da        Isoelectric Point: 6.9903

>NTDB_id=513251 I6G42_RS00495 WP_038804566.1 110365..111294(-) (amiF) [Streptococcus oralis strain FDAARGOS_885]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGQKINGKKSHK
ESADLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=513251 I6G42_RS00495 WP_038804566.1 110365..111294(-) (amiF) [Streptococcus oralis strain FDAARGOS_885]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTGGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTTGGTGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CCATTATTGGTTTAAATAACACTAGTAAAGGTGAGATTATCTTTGATGGCCAGAAAATCAATGGGAAAAAATCTCATAAG
GAATCAGCAGACTTAATCCGTCGTATCCAGATGATTTTCCAGGATCCTGCAGCAAGCTTGAATGAGCGTGCGACTGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCACTTGTTTAAAGATGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TCCATGAAGTTGGACTTTTGAAAGAACACTTAACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTATCAGTGCGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACCTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTCATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATATACTCAGGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGATTATGAGACAGACAAGCCATCTATGGTGGAAATTCGTCCAGGTCACTATGTTT
GGGCCAATCAAGCAGAACTTGCTCGTTACAAGGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3DZ59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838