Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   I6G43_RS07145 Genome accession   NZ_CP065706
Coordinates   1477862..1479094 (-) Length   410 a.a.
NCBI ID   WP_002874765.1    Uniprot ID   A0A1X1GRP7
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1472862..1484094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS07115 (I6G43_07115) - 1473051..1474019 (+) 969 WP_038805964.1 NAD(P)/FAD-dependent oxidoreductase -
  I6G43_RS07120 (I6G43_07120) whiA 1474052..1474963 (-) 912 WP_038805963.1 DNA-binding protein WhiA -
  I6G43_RS07125 (I6G43_07125) - 1474960..1475937 (-) 978 WP_038805962.1 YvcK family protein -
  I6G43_RS07130 (I6G43_07130) rapZ 1475934..1476824 (-) 891 WP_000163039.1 RNase adapter RapZ -
  I6G43_RS07135 (I6G43_07135) - 1476876..1477256 (-) 381 WP_001140420.1 RidA family protein -
  I6G43_RS07140 (I6G43_07140) yihA 1477266..1477853 (-) 588 WP_038805961.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  I6G43_RS07145 (I6G43_07145) clpX 1477862..1479094 (-) 1233 WP_002874765.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I6G43_RS07150 (I6G43_07150) - 1479296..1479802 (-) 507 WP_038805960.1 dihydrofolate reductase -
  I6G43_RS07155 (I6G43_07155) cmk 1479921..1480595 (-) 675 WP_038805959.1 (d)CMP kinase -
  I6G43_RS07160 (I6G43_07160) - 1480605..1481099 (-) 495 WP_038805958.1 SAG1386/EF1546 family surface-associated protein -
  I6G43_RS07165 (I6G43_07165) - 1481145..1481348 (+) 204 WP_084976091.1 ferredoxin -
  I6G43_RS07170 (I6G43_07170) - 1481431..1482396 (-) 966 WP_038805957.1 glycosyltransferase family 2 protein -
  I6G43_RS07175 (I6G43_07175) galE 1482398..1483417 (-) 1020 WP_001156517.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45686.26 Da        Isoelectric Point: 4.4581

>NTDB_id=513231 I6G43_RS07145 WP_002874765.1 1477862..1479094(-) (clpX) [Streptococcus oralis strain FDAARGOS_886]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=513231 I6G43_RS07145 WP_002874765.1 1477862..1479094(-) (clpX) [Streptococcus oralis strain FDAARGOS_886]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTAGCCGAGGAAG
TCTTGGCGGATTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCCTAAATCACTATGTGATTGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTTTATAATCACTATAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAAAAGTCAAATATCCTGATGATTGGGCCAACTGGTTCAGGGAAAACTTTCTTGGCTCAGACTTTGGCTA
AGAGCTTGAACGTGCCTTTTGCTATTGCGGATGCGACGGCTCTGACTGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAGCGTGGGATTATCTACGTAGATGAAATTGA
CAAAATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGTGACGTTTCGGGTGAAGGTGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTCGCCAGCGTACCGCCTCAAGGAGGACGCAAACATCCACAACAAGAGATGATTCAGGTGGATACT
AAAAATATCCTCTTTATCGTGGGTGGTGCTTTTGATGGCATCGAAGAAATCGTTAAACAACGTTTAGGTGAAAAAGTTAT
CGGTTTCGGCCAAAATAACAAGGCAATTGACGAAAACAGCTCCTACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TCGGTATTATTCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCAGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGC
ATCTTGAAAGAACCAAGAAATGCCTTGGTCAAACAATACCAAACCTTGCTTTCTTATGACGATGTAGAGTTGGAATTTGA
CGATGAAGCTCTTCAAGAAATCGCCAATAAGGCTATCGAACGGAAGACAGGTGCGCGTGGTCTTCGCTCAATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAAGTGCCAAGTCAAGAAAATGTGAAATTGGTCCGCATCACAAAAGAAGCTGTCGAT
GGAACGGAAAAACCCATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GRP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563