Detailed information NTG0513075

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6G48_RS18570
• Genome accession: NZ_CP065695
• Coordinates: 4043989..4044873 (-)
• Length: 294 a.a.
• NCBI ID: WP_012207288.1
• Uniprot ID: -
• Organism: Delftia acidovorans strain FDAARGOS_891
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4038989..4049873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G48_RS18540 (I6G48_18535)	argJ	4039297..4040529 (+)	1233	WP_012207294.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
I6G48_RS18545 (I6G48_18540)	-	4040695..4041651 (+)	957	WP_012207293.1	ATP-binding protein	-
I6G48_RS18550 (I6G48_18545)	-	4041702..4042220 (+)	519	WP_012207292.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
I6G48_RS18555 (I6G48_18550)	-	4042231..4042467 (-)	237	WP_085930583.1	DNA gyrase inhibitor YacG	-
I6G48_RS18560 (I6G48_18555)	zapD	4042485..4043240 (-)	756	WP_012207290.1	cell division protein ZapD	-
I6G48_RS18565 (I6G48_18560)	coaE	4043330..4043974 (-)	645	WP_012207289.1	dephospho-CoA kinase	-
I6G48_RS18570 (I6G48_18565)	pilD	4043989..4044873 (-)	885	WP_012207288.1	prepilin peptidase	Machinery gene
I6G48_RS18575 (I6G48_18570)	pilC	4044873..4046090 (-)	1218	WP_012207287.1	type II secretion system F family protein	Machinery gene
I6G48_RS18580 (I6G48_18575)	pilB	4046129..4047871 (-)	1743	WP_012207286.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6G48_RS18590 (I6G48_18585)	-	4048112..4049041 (-)	930	WP_034396917.1	polyprenyl synthetase family protein	-
I6G48_RS18595 (I6G48_18590)	rplU	4049272..4049583 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
I6G48_RS18600 (I6G48_18595)	rpmA	4049599..4049856 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 31719.27 Da
• Isoelectric Point: 6.6134

>NTDB_id=513075 I6G48_RS18570 WP_012207288.1 4043989..4044873(-) (pilD) [Delftia acidovorans strain FDAARGOS_891]
MVLELWMQATLGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSGATPPSAAPDPAEPPLSLSRPRSRCPHCGH
AIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCTMQWGITPTGAAWCLFSAALLSLALIDWDTTLLPD
DITLPLLWAGLLSSALHWTAVTLADAVWGAAVGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILIS
SVIGAVVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAAIGL

Nucleotide

• Length: 885 bp

>NTDB_id=513075 I6G48_RS18570 WP_012207288.1 4043989..4044873(-) (pilD) [Delftia acidovorans strain FDAARGOS_891]
ATGGTTTTGGAACTCTGGATGCAGGCTACATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAACAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAGGAGCAATCCGGTGCCACGC
CCCCCTCTGCTGCGCCTGACCCTGCCGAGCCTCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCATTGCGGCCAT
GCCATCCACTGGTACGAGAACATTCCCGTGCTCAGCTATCTGGCGCTGCGGGGCCGGTGCTCGGAATGCAAGGCATCGAT
CAGCATCCGCTACCCGCTGGTGGAACTGGCCTGCGCTGCGCTATTCGCCTACTGCACGATGCAATGGGGCATCACGCCCA
CAGGCGCTGCCTGGTGCCTTTTCAGCGCCGCCTTGCTGAGCCTGGCATTGATCGACTGGGATACCACACTGCTCCCAGAC
GACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGACTCTGGCCGACGCGGT
CTGGGGTGCCGCAGTGGGCTATCTTTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGGAAGGCATGG
GCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATCCTGATCTCG
TCCGTGATTGGCGCCGTCGTGGGCATTGCGCTGAAGATCAACAGCCGCCTGCGCGAAGGTGGCTATGTTCCCTTTGGCCC
CTTTCTTGCGGGCGCCGGCTTTGCCGCCATGGTGTTCGGACCCCAGCAGATGCTGCAATCCCTGTTGGCAGCCATCGGTC
TTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-128)

• Type IV leader peptidase family (Peptidase_A24) (140-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.429	95.238	0.49
pilD	Vibrio campbellii strain DS40M4	46.763	94.558	0.442
pilD	Acinetobacter nosocomialis M2	44.485	92.517	0.412
pilD	Acinetobacter baumannii D1279779	44.118	92.517	0.408
pilD	Neisseria gonorrhoeae MS11	45.627	89.456	0.408