Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KUU68_RS28700 Genome accession   NZ_CP078002
Coordinates   6156622..6157218 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain QZPH21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6151622..6162218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUU68_RS28680 (KUU68_28675) aroK 6152753..6153271 (-) 519 WP_003095833.1 shikimate kinase AroK -
  KUU68_RS28685 (KUU68_28680) pilQ 6153283..6155427 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  KUU68_RS28690 (KUU68_28685) comL/pilP 6155481..6156005 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  KUU68_RS28695 (KUU68_28690) pilO 6156002..6156625 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  KUU68_RS28700 (KUU68_28695) pilN 6156622..6157218 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  KUU68_RS28705 (KUU68_28700) pilM 6157218..6158282 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  KUU68_RS28710 (KUU68_28705) - 6158467..6160938 (+) 2472 WP_031756300.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=513007 KUU68_RS28700 WP_003095839.1 6156622..6157218(-) (pilN) [Pseudomonas aeruginosa strain QZPH21]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=513007 KUU68_RS28700 WP_003095839.1 6156622..6157218(-) (pilN) [Pseudomonas aeruginosa strain QZPH21]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCACTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369