Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   KUU68_RS28690 Genome accession   NZ_CP078002
Coordinates   6155481..6156005 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain QZPH21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6150481..6161005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUU68_RS28675 (KUU68_28670) aroB 6151597..6152703 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  KUU68_RS28680 (KUU68_28675) aroK 6152753..6153271 (-) 519 WP_003095833.1 shikimate kinase AroK -
  KUU68_RS28685 (KUU68_28680) pilQ 6153283..6155427 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  KUU68_RS28690 (KUU68_28685) comL/pilP 6155481..6156005 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  KUU68_RS28695 (KUU68_28690) pilO 6156002..6156625 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  KUU68_RS28700 (KUU68_28695) pilN 6156622..6157218 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  KUU68_RS28705 (KUU68_28700) pilM 6157218..6158282 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  KUU68_RS28710 (KUU68_28705) - 6158467..6160938 (+) 2472 WP_031756300.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=513005 KUU68_RS28690 WP_003095836.1 6155481..6156005(-) (comL/pilP) [Pseudomonas aeruginosa strain QZPH21]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=513005 KUU68_RS28690 WP_003095836.1 6155481..6156005(-) (comL/pilP) [Pseudomonas aeruginosa strain QZPH21]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACTATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362