Detailed information    

insolico Bioinformatically predicted

Overview

Name   covS   Type   Regulator
Locus tag   I6G50_RS00805 Genome accession   NZ_CP065691
Coordinates   131444..132934 (+) Length   496 a.a.
NCBI ID   WP_197908880.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 126444..137934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS00775 (I6G50_00775) pfkB 126455..127381 (+) 927 WP_197908877.1 1-phosphofructokinase -
  I6G50_RS00780 (I6G50_00780) - 127396..129303 (+) 1908 WP_197908878.1 PTS fructose transporter subunit IIABC -
  I6G50_RS00785 (I6G50_00785) - 129550..129792 (+) 243 WP_003135050.1 type B 50S ribosomal protein L31 -
  I6G50_RS00790 (I6G50_00790) - 129782..130039 (+) 258 WP_197908879.1 hypothetical protein -
  I6G50_RS00795 (I6G50_00795) - 130020..130571 (+) 552 WP_003135049.1 YceD family protein -
  I6G50_RS00800 (I6G50_00800) covR 130673..131368 (+) 696 WP_003135047.1 response regulator transcription factor Regulator
  I6G50_RS00805 (I6G50_00805) covS 131444..132934 (+) 1491 WP_197908880.1 HAMP domain-containing sensor histidine kinase Regulator
  I6G50_RS00810 (I6G50_00810) - 133327..134898 (+) 1572 WP_003135045.1 ABC transporter permease subunit -
  I6G50_RS00815 (I6G50_00815) - 134899..135636 (+) 738 WP_003135044.1 amino acid ABC transporter ATP-binding protein -
  I6G50_RS00820 (I6G50_00820) murD 135805..137166 (+) 1362 WP_197908881.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56940.12 Da        Isoelectric Point: 4.8629

>NTDB_id=513001 I6G50_RS00805 WP_197908880.1 131444..132934(+) (covS) [Lactococcus garvieae strain FDAARGOS_893]
MAKFFDSKKEITESLPERKRSIMLRWAFANTIFCFITFTIFAVLVYQLTITTFINSEKDDMMRALDNVEQSLSQAEMPLS
EKNLSNYLAYARDYTTSNQARENELETLGSMIGSRKSFYVFDVSENLLYSTNAYGFPLRKDVGDSTDAVRTFGDYSGYLV
ERPVHSQKTGKLVGYVQAFYDMSYYYTVRTKLLIALIILEIIALFIAQFVGYFMASRYIKPLERLHDAIITRTNNLSMDF
KPVVIQTGDEIEELATVYNDMMTKINEYVDQQKRFVSDVSHELRTPLAVLDGHLNLLNRWGKNDPEVLDESLLASIEEVK
TMRTMLEEMLALARLESIDFRDEDLICDPIEVSNFLMKNFLLIHPDLDLTVKNDLTPGRLAHIYPNHYEQGLKILIDNAI
KYSPADRQEVSIHLEEDENFIITSVEDHGYGIGEEDLKHIFERFFRADKARNRDIGGTGLGLSIISRLVKNYEGDISVTS
VLGEGSKFILKIPKIK

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=513001 I6G50_RS00805 WP_197908880.1 131444..132934(+) (covS) [Lactococcus garvieae strain FDAARGOS_893]
ATGGCAAAATTTTTTGATTCGAAAAAAGAAATAACAGAAAGTCTACCAGAAAGAAAGCGGAGCATTATGCTTCGCTGGGC
TTTTGCTAATACAATTTTCTGTTTTATCACCTTTACTATTTTTGCAGTATTGGTTTATCAACTCACAATCACAACTTTTA
TCAACTCTGAAAAAGATGACATGATGAGAGCTTTGGATAATGTAGAACAGAGTCTGTCTCAGGCTGAAATGCCTTTGTCA
GAAAAAAACCTCTCAAACTATTTAGCTTATGCGAGAGACTATACGACTTCAAATCAAGCAAGAGAGAATGAACTTGAGAC
TTTAGGGAGTATGATTGGATCGAGAAAGTCTTTTTATGTTTTTGACGTGAGTGAAAATCTTCTTTATTCTACGAATGCTT
ATGGTTTTCCTCTGAGAAAAGATGTGGGGGATTCCACTGATGCGGTACGTACCTTTGGGGACTATTCTGGATACTTAGTA
GAACGCCCTGTTCATTCTCAGAAAACAGGGAAGCTGGTTGGCTATGTGCAAGCTTTCTACGACATGAGTTATTATTATAC
TGTACGTACGAAGTTACTCATCGCCCTGATTATTTTAGAAATAATCGCGCTCTTTATCGCTCAATTTGTAGGTTACTTTA
TGGCAAGTCGTTATATCAAACCACTTGAGCGTTTACATGATGCTATTATCACCAGAACCAATAACTTGAGTATGGATTTC
AAACCTGTGGTGATTCAGACAGGCGATGAAATCGAAGAGCTGGCTACGGTCTATAATGATATGATGACCAAAATTAACGA
GTATGTGGATCAGCAAAAACGGTTTGTTTCAGATGTGAGCCATGAGTTACGGACTCCATTAGCGGTTCTTGACGGGCATT
TAAATCTCTTGAATCGTTGGGGGAAAAACGATCCCGAAGTGCTTGATGAATCTTTGTTGGCAAGTATTGAGGAAGTTAAG
ACGATGCGGACCATGCTTGAAGAAATGCTCGCCTTGGCACGATTAGAAAGCATTGATTTCCGAGATGAGGACTTGATTTG
CGATCCAATTGAAGTTTCAAACTTTTTGATGAAAAACTTTTTACTTATTCATCCGGATTTGGATTTGACAGTAAAAAATG
ACTTGACCCCAGGAAGATTAGCCCATATTTACCCTAACCATTATGAACAAGGACTGAAAATCTTGATTGACAACGCTATA
AAGTATTCACCAGCAGATCGTCAAGAAGTAAGCATTCATTTGGAAGAAGACGAAAACTTCATCATTACAAGTGTGGAAGA
CCATGGTTACGGTATTGGTGAAGAGGACCTGAAGCATATTTTTGAGCGCTTCTTCCGTGCGGATAAGGCGCGTAATCGTG
ATATAGGGGGAACTGGACTCGGTCTTTCGATTATTAGTCGACTTGTGAAAAACTATGAAGGGGATATTAGTGTAACTTCG
GTTCTAGGAGAAGGTTCTAAATTTATCTTGAAAATCCCTAAAATTAAATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(272-337)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(389-494)

ArlS sensor domain (ArlS_N)

(52-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covS Lactococcus lactis subsp. lactis strain DGCC12653

57.317

99.194

0.569