Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   I6G50_RS00615 Genome accession   NZ_CP065691
Coordinates   94828..95517 (+) Length   229 a.a.
NCBI ID   WP_197908865.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 89828..100517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS00605 (I6G50_00605) rpoC 89916..93563 (+) 3648 WP_197909389.1 DNA-directed RNA polymerase subunit beta' -
  I6G50_RS00610 (I6G50_00610) - 93663..94571 (-) 909 WP_197908864.1 diacylglycerol/lipid kinase family protein -
  I6G50_RS00615 (I6G50_00615) mecA 94828..95517 (+) 690 WP_197908865.1 adaptor protein MecA Regulator
  I6G50_RS00620 (I6G50_00620) - 95521..96777 (+) 1257 WP_081165118.1 MraY family glycosyltransferase -
  I6G50_RS00625 (I6G50_00625) sufC 96854..97624 (+) 771 WP_003135091.1 Fe-S cluster assembly ATPase SufC -
  I6G50_RS00630 (I6G50_00630) sufD 97696..98952 (+) 1257 WP_197909390.1 Fe-S cluster assembly protein SufD -
  I6G50_RS00635 (I6G50_00635) - 98952..100163 (+) 1212 WP_197908866.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26460.64 Da        Isoelectric Point: 4.0824

>NTDB_id=512997 I6G50_RS00615 WP_197908865.1 94828..95517(+) (mecA) [Lactococcus garvieae strain FDAARGOS_893]
MQYEEINEKTIKISLTFQDLVDHDVKLSDFFTNQSMVENLFYELVEELGLEERFSSGLLTFQIQPFPKGVNIIVTEENID
IDPNNLPDDPEEFEQLMTDFFGRVEDLKQNGGAMTDTSTTENKEVKAEAENKPQPDFVFYSLEFDNMTQLLTAVKNVKIE
AEESELYRYEDKFYLIILDNQKSKGKTAVSTMRARMLEYGHETASSRETLQEYGEILITSRALEVLSKI

Nucleotide


Download         Length: 690 bp        

>NTDB_id=512997 I6G50_RS00615 WP_197908865.1 94828..95517(+) (mecA) [Lactococcus garvieae strain FDAARGOS_893]
ATGCAATATGAAGAAATAAACGAAAAAACGATAAAGATTAGCCTAACTTTTCAAGATTTAGTTGATCATGATGTCAAGCT
CTCTGACTTTTTTACAAACCAATCAATGGTTGAAAATCTCTTTTATGAACTCGTAGAAGAGCTGGGACTGGAAGAAAGAT
TCTCTTCAGGACTTTTAACTTTCCAAATCCAACCTTTTCCGAAGGGCGTAAATATTATTGTTACAGAAGAAAATATTGAT
ATTGATCCCAATAATCTCCCAGATGATCCTGAAGAGTTTGAGCAACTTATGACAGACTTTTTTGGGCGTGTCGAGGATTT
GAAACAAAATGGCGGAGCAATGACAGATACAAGTACAACGGAAAATAAAGAAGTAAAAGCAGAAGCAGAGAATAAGCCAC
AACCGGACTTTGTGTTCTATTCCCTAGAGTTTGACAATATGACACAACTCTTGACAGCTGTAAAAAATGTAAAAATTGAG
GCTGAAGAATCAGAGCTTTATCGTTACGAAGATAAATTCTATCTGATTATTTTAGATAACCAAAAGTCTAAAGGAAAAAC
AGCTGTAAGCACGATGCGAGCACGTATGTTGGAATATGGTCATGAAACGGCAAGCAGCCGCGAAACTTTACAGGAGTATG
GGGAAATACTAATAACTTCACGCGCTTTAGAAGTTCTCTCAAAAATTTAA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Lactococcus lactis subsp. cremoris KW2

54.077

100

0.55
  mecA Lactococcus lactis subsp. lactis strain DGCC12653

52.79

100

0.537