Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6G67_RS01590 Genome accession   NZ_CP065666
Coordinates   308700..309347 (-) Length   215 a.a.
NCBI ID   WP_004691355.1    Uniprot ID   A0A380U6G8
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 309334..316941 308700..309347 flank -13


Gene organization within MGE regions


Location: 308700..316941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS01590 (I6G67_01590) comF 308700..309347 (-) 648 WP_004691355.1 ComF family protein Machinery gene
  I6G67_RS01595 (I6G67_01595) recG 309334..311379 (-) 2046 WP_004691354.1 ATP-dependent DNA helicase RecG -
  I6G67_RS01600 (I6G67_01600) - 311413..312228 (+) 816 WP_004691351.1 NAD-dependent epimerase/dehydratase family protein -
  I6G67_RS01605 (I6G67_01605) - 312423..313748 (-) 1326 Protein_299 ISNCY family transposase -
  I6G67_RS01610 (I6G67_01610) - 313868..314329 (+) 462 WP_004691350.1 hypothetical protein -
  I6G67_RS01615 (I6G67_01615) - 314489..315814 (+) 1326 WP_080631517.1 ISNCY family transposase -
  I6G67_RS01620 (I6G67_01620) - 315979..316941 (+) 963 WP_004691346.1 IS30-like element IS18 family transposase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24959.13 Da        Isoelectric Point: 8.9619

>NTDB_id=512776 I6G67_RS01590 WP_004691355.1 308700..309347(-) (comF) [Acinetobacter johnsonii strain FDAARGOS_910]
MHMFSHLLHTAKQLLHRAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGHYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRFPKVQAIVPMPISSQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYVKLYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=512776 I6G67_RS01590 WP_004691355.1 308700..309347(-) (comF) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGCATATGTTTAGTCATCTGCTACATACTGCCAAACAGTTGCTACACAGAGCACAGCCCTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTACATTCGGTCTGTTTGGATTGCTGGCAACAACTCCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTGGCGGGACATTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTCCCTAAAGTGCAAGCAATTGTTCCAATGCCGATTTCGAG
CCAGCGTTTAGCCGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGCTAAATGTGCCCATTT
GGCAACCTGTGATACGACTGCATCAACATTCACAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGTAAAACTCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCCATTCAGGCACTGACTTTACAACTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U6G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

56.398

98.14

0.553
  comF Acinetobacter baumannii strain A118

59.278

90.233

0.535