Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6G67_RS01295 Genome accession   NZ_CP065666
Coordinates   251105..251530 (+) Length   141 a.a.
NCBI ID   WP_004691457.1    Uniprot ID   A0A380U877
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 246105..256530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS01280 (I6G67_01280) - 246220..246909 (+) 690 WP_004691461.1 hypothetical protein -
  I6G67_RS01285 (I6G67_01285) - 246927..250517 (+) 3591 WP_004691459.1 hypothetical protein -
  I6G67_RS01290 (I6G67_01290) - 250527..251105 (+) 579 WP_017397237.1 type IV pilin protein -
  I6G67_RS01295 (I6G67_01295) comF 251105..251530 (+) 426 WP_004691457.1 type IV pilin protein Machinery gene
  I6G67_RS01300 (I6G67_01300) rpsP 251675..251932 (+) 258 WP_004678724.1 30S ribosomal protein S16 -
  I6G67_RS01305 (I6G67_01305) rimM 251952..252500 (+) 549 WP_004691456.1 ribosome maturation factor RimM -
  I6G67_RS01310 (I6G67_01310) trmD 252528..253268 (+) 741 WP_004691455.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6G67_RS01315 (I6G67_01315) rplS 253409..253783 (+) 375 WP_004691454.1 50S ribosomal protein L19 -
  I6G67_RS01320 (I6G67_01320) - 253842..254813 (-) 972 WP_004691453.1 triacylglycerol lipase -
  I6G67_RS01325 (I6G67_01325) - 254938..255942 (-) 1005 WP_017397236.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15576.67 Da        Isoelectric Point: 8.4210

>NTDB_id=512775 I6G67_RS01295 WP_004691457.1 251105..251530(+) (comF) [Acinetobacter johnsonii strain FDAARGOS_910]
MWLQKGFNLIELMIVVAIIGILAAIAYPSYTQYKIRTNRADVQGEMMQIAQRLQSYYVINHNYTSATLDNGATTKDYPTS
NPVYSITLVPNGQTYTLTAEPKSGTVQVGNGSVILDSQGRKCWTKTTTDCVPSATSNWDGR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=512775 I6G67_RS01295 WP_004691457.1 251105..251530(+) (comF) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGTGGTTACAAAAAGGATTTAATCTAATTGAATTAATGATTGTTGTCGCAATTATTGGCATCTTGGCAGCAATTGCTTA
TCCATCTTACACACAGTACAAAATCCGTACCAATCGGGCAGATGTGCAAGGTGAAATGATGCAAATTGCACAACGTCTAC
AGAGTTATTACGTTATCAACCATAACTATACCAGCGCAACACTGGATAATGGTGCAACTACAAAGGATTACCCAACATCT
AATCCTGTTTATAGCATTACACTGGTCCCGAATGGTCAAACTTATACGTTAACTGCAGAACCTAAATCTGGTACTGTTCA
GGTGGGTAATGGAAGTGTAATTTTAGATAGTCAGGGAAGGAAGTGTTGGACTAAAACAACTACAGATTGCGTTCCCTCAG
CCACCTCCAACTGGGACGGACGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-106)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U877

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

52.083

100

0.532
  pilE Acinetobacter baumannii D1279779

46.043

98.582

0.454
  pilA2 Legionella pneumophila str. Paris

43.2

88.652

0.383
  pilA2 Legionella pneumophila strain ERS1305867

43.2

88.652

0.383