Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G68_RS01115 Genome accession   NZ_CP065662
Coordinates   248045..248617 (-) Length   190 a.a.
NCBI ID   WP_060779015.1    Uniprot ID   A0A0X8FFW9
Organism   Aerococcus urinae strain FDAARGOS_911     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 243045..253617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G68_RS01100 (I6G68_01100) - 246821..247342 (-) 522 WP_158083606.1 DUF3278 domain-containing protein -
  I6G68_RS01105 (I6G68_01105) - 247323..247532 (-) 210 WP_060779016.1 helix-turn-helix transcriptional regulator -
  I6G68_RS01110 (I6G68_01110) rpsR 247778..248017 (-) 240 WP_013669454.1 30S ribosomal protein S18 -
  I6G68_RS01115 (I6G68_01115) ssb 248045..248617 (-) 573 WP_060779015.1 single-stranded DNA-binding protein Machinery gene
  I6G68_RS01120 (I6G68_01120) rpsF 248653..248955 (-) 303 WP_013669618.1 30S ribosomal protein S6 -
  I6G68_RS01125 (I6G68_01125) - 249279..250580 (+) 1302 WP_060785028.1 amidohydrolase -
  I6G68_RS01130 (I6G68_01130) - 250573..251991 (+) 1419 WP_060779013.1 YfcC family protein -
  I6G68_RS01135 (I6G68_01135) - 252023..253012 (+) 990 WP_060779012.1 asparaginase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20886.50 Da        Isoelectric Point: 4.2964

>NTDB_id=512748 I6G68_RS01115 WP_060779015.1 248045..248617(-) (ssb) [Aerococcus urinae strain FDAARGOS_911]
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQASDNGNNFANPGNNFANDSFGSNQSFGGYNNQQDSPSMNDNSFGGS
NDPFAGGNNNPFPSNDNDGSINIADDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=512748 I6G68_RS01115 WP_060779015.1 248045..248617(-) (ssb) [Aerococcus urinae strain FDAARGOS_911]
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGGGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACCCAAACCGATTTCATCAATTGTGTGATGT
GGCGTAAGGCTGCTGAAAACTTTGCTAAATTCACACGGAAAGGTTCTTTGGTAGGGATTGAAGGGAATATTCAAACCCGT
AATTACGAAAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTTTAGCCAATAACTTTAGCCTACTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGCCAGTGACAATGGCAATAACTTTGCCAACCCAGGCAATAATTTTGCTAATGACTCTT
TTGGCTCCAATCAAAGCTTTGGCGGCTATAATAATCAACAAGATTCCCCTTCAATGAATGATAACAGCTTTGGTGGATCC
AACGACCCATTTGCTGGTGGAAATAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8FFW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.368

100

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.187

100

0.489