Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | I6G71_RS09795 | Genome accession | NZ_CP065653 |
| Coordinates | 1930301..1930765 (+) | Length | 154 a.a. |
| NCBI ID | WP_010981060.1 | Uniprot ID | - |
| Organism | Neisseria meningitidis strain FDAARGOS_914 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1930466..1949840 | 1930301..1930765 | flank | -299 |
Gene organization within MGE regions
Location: 1930301..1949840
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G71_RS09795 (I6G71_09795) | comE | 1930301..1930765 (+) | 465 | WP_010981060.1 | ComEA family DNA-binding protein | Machinery gene |
| I6G71_RS09800 (I6G71_09800) | dnaJ | 1931035..1932156 (+) | 1122 | WP_002215274.1 | molecular chaperone DnaJ | - |
| I6G71_RS09805 (I6G71_09805) | - | 1932351..1934369 (+) | 2019 | WP_002236572.1 | OPT family oligopeptide transporter | - |
| I6G71_RS09810 (I6G71_09810) | rfbC | 1934412..1934969 (-) | 558 | WP_164732759.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| I6G71_RS09815 (I6G71_09815) | rfbA | 1935023..1935889 (-) | 867 | WP_002221803.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| I6G71_RS09820 (I6G71_09820) | rfbB | 1935995..1937020 (-) | 1026 | WP_002236574.1 | dTDP-glucose 4,6-dehydratase | - |
| I6G71_RS09825 (I6G71_09825) | galE | 1937136..1938155 (-) | 1020 | WP_082308721.1 | UDP-glucose 4-epimerase GalE | - |
| I6G71_RS09830 (I6G71_09830) | - | 1938200..1939063 (-) | 864 | WP_002236576.1 | galactosyltransferase-related protein | - |
| I6G71_RS09835 (I6G71_09835) | - | 1939065..1939808 (-) | 744 | WP_002236577.1 | YqiA/YcfP family alpha/beta fold hydrolase | - |
| I6G71_RS09840 (I6G71_09840) | - | 1939881..1941518 (-) | 1638 | WP_002236578.1 | stealth family protein | - |
| I6G71_RS09845 (I6G71_09845) | wecB | 1941520..1942638 (-) | 1119 | WP_002236579.1 | non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase | - |
| I6G71_RS09850 (I6G71_09850) | ctrA | 1942857..1944020 (+) | 1164 | WP_002236580.1 | capsule polysaccharide export outer membrane protein CtrA | - |
| I6G71_RS09855 (I6G71_09855) | - | 1944035..1945198 (+) | 1164 | WP_002236581.1 | capsule polysaccharide export inner-membrane protein CtrB | - |
| I6G71_RS09860 (I6G71_09860) | - | 1945198..1945995 (+) | 798 | WP_002236582.1 | ABC transporter permease | - |
| I6G71_RS09865 (I6G71_09865) | - | 1945992..1946642 (+) | 651 | WP_002218516.1 | ABC transporter ATP-binding protein | - |
| I6G71_RS09870 (I6G71_09870) | - | 1946706..1948979 (+) | 2274 | WP_002239407.1 | Tex family protein | - |
| I6G71_RS09875 (I6G71_09875) | - | 1949010..1949840 (+) | 831 | WP_002215283.1 | DNA cytosine methyltransferase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16529.75 Da Isoelectric Point: 10.6993
>NTDB_id=512702 I6G71_RS09795 WP_010981060.1 1930301..1930765(+) (comE) [Neisseria meningitidis strain FDAARGOS_914]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK
Nucleotide
Download Length: 465 bp
>NTDB_id=512702 I6G71_RS09795 WP_010981060.1 1930301..1930765(+) (comE) [Neisseria meningitidis strain FDAARGOS_914]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAA
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
94.262 |
79.221 |
0.747 |
| comE | Neisseria gonorrhoeae MS11 |
94.262 |
79.221 |
0.747 |
| comE | Neisseria gonorrhoeae MS11 |
94.262 |
79.221 |
0.747 |
| comE | Neisseria gonorrhoeae MS11 |
94.262 |
79.221 |
0.747 |