Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   I6G80_RS01280 Genome accession   NZ_CP065647
Coordinates   184987..185433 (+) Length   148 a.a.
NCBI ID   WP_009330244.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 179987..190433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS01260 (I6G80_01260) - 181149..181889 (+) 741 WP_003178817.1 ribonuclease YeeF family protein -
  I6G80_RS01265 (I6G80_01265) - 182080..183689 (+) 1610 Protein_151 methyl-accepting chemotaxis protein -
  I6G80_RS01270 (I6G80_01270) - 183709..184512 (-) 804 WP_017473997.1 serine/threonine protein kinase -
  I6G80_RS01275 (I6G80_01275) - 184518..184721 (-) 204 WP_003178812.1 hypothetical protein -
  I6G80_RS01280 (I6G80_01280) nucA/comI 184987..185433 (+) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  I6G80_RS01285 (I6G80_01285) nin/comJ 185451..185849 (+) 399 WP_017473998.1 competence protein ComJ Regulator
  I6G80_RS01290 (I6G80_01290) - 185888..187324 (-) 1437 WP_017473999.1 glycoside hydrolase family 1 protein -
  I6G80_RS01295 (I6G80_01295) - 187394..188119 (-) 726 WP_003178804.1 AAA family ATPase -
  I6G80_RS01300 (I6G80_01300) - 188216..188768 (-) 553 Protein_158 NAD(P)H-dependent oxidoreductase -
  I6G80_RS01305 (I6G80_01305) - 188952..189827 (+) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16180.11 Da        Isoelectric Point: 5.2521

>NTDB_id=512501 I6G80_RS01280 WP_009330244.1 184987..185433(+) (nucA/comI) [Bacillus licheniformis strain FDAARGOS_923]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAA
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=512501 I6G80_RS01280 WP_009330244.1 184987..185433(+) (nucA/comI) [Bacillus licheniformis strain FDAARGOS_923]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGCC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642