Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6G82_RS18995 Genome accession   NZ_CP065643
Coordinates   3851352..3851921 (+) Length   189 a.a.
NCBI ID   WP_053997087.1    Uniprot ID   A0A0M9DGZ8
Organism   Lysinibacillus macroides strain FDAARGOS_925     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3846352..3856921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G82_RS18965 (I6G82_18900) - 3846748..3847620 (+) 873 WP_053997081.1 mechanosensitive ion channel family protein -
  I6G82_RS18970 (I6G82_18905) - 3847622..3847822 (+) 201 WP_053997082.1 DUF951 domain-containing protein -
  I6G82_RS18975 (I6G82_18910) ychF 3847920..3849020 (+) 1101 WP_053997083.1 redox-regulated ATPase YchF -
  I6G82_RS18980 (I6G82_18915) - 3849210..3850250 (+) 1041 WP_053997084.1 acyl-CoA dehydrogenase -
  I6G82_RS18985 (I6G82_18920) - 3850309..3850857 (-) 549 WP_053997085.1 DUF3267 domain-containing protein -
  I6G82_RS18990 (I6G82_18925) rpsF 3851024..3851311 (+) 288 WP_053997086.1 30S ribosomal protein S6 -
  I6G82_RS18995 (I6G82_18930) ssbA 3851352..3851921 (+) 570 WP_053997087.1 single-stranded DNA-binding protein Machinery gene
  I6G82_RS19000 (I6G82_18935) rpsR 3851962..3852198 (+) 237 WP_004233359.1 30S ribosomal protein S18 -
  I6G82_RS19005 (I6G82_18940) - 3852392..3852673 (+) 282 WP_053997088.1 phage integrase N-terminal SAM-like domain-containing protein -
  I6G82_RS19010 (I6G82_18945) - 3853272..3853487 (+) 216 WP_053997089.1 hypothetical protein -
  I6G82_RS19015 (I6G82_18950) - 3854288..3854710 (+) 423 WP_152928069.1 hypothetical protein -
  I6G82_RS19020 (I6G82_18955) - 3854805..3856628 (+) 1824 WP_053997091.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20535.53 Da        Isoelectric Point: 4.7719

>NTDB_id=512493 I6G82_RS18995 WP_053997087.1 3851352..3851921(+) (ssbA) [Lysinibacillus macroides strain FDAARGOS_925]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPAPQYGGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=512493 I6G82_RS18995 WP_053997087.1 3851352..3851921(+) (ssbA) [Lysinibacillus macroides strain FDAARGOS_925]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCAAATGGCATTGCGTCCAC
ACGATTTACAGTTGCTGTTAATCGTACATTCTCAAACCAACAGGGTGAACGTGAGGCAGACTTTATAAGCTGTGTTGCAT
GGCGAAAACAGGCTGAAAACCTAGCGAACTTTATGCGAAAAGGAAGTTTGATTGGGGTAGAAGGTCGTATCCAAACAGGC
AGCTATGAAGGACAAGACGGTAAACGAGTATACACAACAGATGTTGTAGCGGATAGCGTACAGTTTTTAGAACCCCGTAG
TGGTGGCGGTGCTCCTGCTCCTCAATATGGTGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAGTTTGGTGGCGCTATGCCAGGGCAGGGTTCCTATGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCGAATTATACACGTGTAGATGAGGATCCATTTGCGAATAGCAAAGGACCAATAGAAGTATCAGAGGATGATCT
TCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.497

100

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

48.148

100

0.481