Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6G87_RS11345 Genome accession   NZ_CP065635
Coordinates   2403364..2404251 (+) Length   295 a.a.
NCBI ID   WP_014614089.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain FDAARGOS_930     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2398364..2409251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G87_RS11320 (I6G87_11320) ylqF 2398748..2399620 (+) 873 WP_103263431.1 ribosome biogenesis GTPase YlqF -
  I6G87_RS11325 (I6G87_11325) - 2399613..2400398 (+) 786 WP_014614093.1 ribonuclease HII -
  I6G87_RS11330 (I6G87_11330) - 2400490..2400765 (+) 276 WP_014614092.1 hypothetical protein -
  I6G87_RS11335 (I6G87_11335) sucC 2401032..2402198 (+) 1167 WP_014614091.1 ADP-forming succinate--CoA ligase subunit beta -
  I6G87_RS11340 (I6G87_11340) sucD 2402220..2403125 (+) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  I6G87_RS11345 (I6G87_11345) dprA 2403364..2404251 (+) 888 WP_014614089.1 DNA-processing protein DprA Machinery gene
  I6G87_RS11350 (I6G87_11350) topA 2404335..2406404 (+) 2070 WP_014614088.1 type I DNA topoisomerase -
  I6G87_RS11355 (I6G87_11355) trmFO 2406432..2407736 (+) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I6G87_RS11360 (I6G87_11360) xerC 2407857..2408747 (+) 891 WP_037543179.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33675.17 Da        Isoelectric Point: 8.6171

>NTDB_id=512373 I6G87_RS11345 WP_014614089.1 2403364..2404251(+) (dprA) [Staphylococcus pseudintermedius strain FDAARGOS_930]
MKQLLLLLLYAGFSTQQIQYYYPKLCTLTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLAFGHFHHYPKNTQALRQRMEQHHLTISEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=512373 I6G87_RS11345 WP_014614089.1 2403364..2404251(+) (dprA) [Staphylococcus pseudintermedius strain FDAARGOS_930]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATTCAATACTATTACCCTAAACTTTGTAC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCGATGCTTTCACACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGCCTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTATAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.379

98.305

0.505
  dprA Staphylococcus aureus N315

51.034

98.305

0.502