Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   I4W80_RS11240 Genome accession   NZ_CP065591
Coordinates   2210099..2210434 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 1817     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2205099..2215434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS11220 (I4W80_11220) gcvT 2205575..2206672 (-) 1098 WP_017357975.1 glycine cleavage system aminomethyltransferase GcvT -
  I4W80_RS11225 (I4W80_11225) - 2207234..2208904 (+) 1671 WP_017357976.1 DEAD/DEAH box helicase -
  I4W80_RS11230 (I4W80_11230) - 2208919..2209716 (+) 798 WP_017357977.1 YqhG family protein -
  I4W80_RS11235 (I4W80_11235) - 2209901..2210065 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  I4W80_RS11240 (I4W80_11240) sinR 2210099..2210434 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  I4W80_RS11245 (I4W80_11245) tasA 2210502..2211302 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  I4W80_RS11250 (I4W80_11250) sipW 2211361..2211933 (-) 573 WP_017357979.1 signal peptidase I SipW -
  I4W80_RS11255 (I4W80_11255) tapA 2211983..2212510 (-) 528 WP_017357980.1 amyloid fiber anchoring/assembly protein TapA -
  I4W80_RS11260 (I4W80_11260) - 2212781..2213089 (+) 309 WP_206116235.1 DUF3889 domain-containing protein -
  I4W80_RS11265 (I4W80_11265) - 2213124..2213318 (-) 195 WP_008342191.1 YqzE family protein -
  I4W80_RS11270 (I4W80_11270) - 2213379..2213762 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  I4W80_RS11275 (I4W80_11275) comGF 2213759..2214256 (-) 498 WP_017357983.1 competence type IV pilus minor pilin ComGF -
  I4W80_RS11280 (I4W80_11280) comGE 2214198..2214512 (-) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  I4W80_RS11285 (I4W80_11285) comGD 2214496..2214942 (-) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  I4W80_RS11290 (I4W80_11290) comGC 2214935..2215228 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=512123 I4W80_RS11240 WP_017357978.1 2210099..2210434(+) (sinR) [Bacillus altitudinis strain 1817]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=512123 I4W80_RS11240 WP_017357978.1 2210099..2210434(+) (sinR) [Bacillus altitudinis strain 1817]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928