Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KUU78_RS02795 Genome accession   NZ_CP077971
Coordinates   590128..590853 (-) Length   241 a.a.
NCBI ID   WP_222821496.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ZPPH33     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585128..595853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUU78_RS02770 (KUU78_02770) - 585600..586115 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  KUU78_RS02775 (KUU78_02775) rarD 586805..587701 (-) 897 WP_003103301.1 EamA family transporter RarD -
  KUU78_RS02780 (KUU78_02780) - 587904..588878 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  KUU78_RS02785 (KUU78_02785) - 588940..589698 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  KUU78_RS02790 (KUU78_02790) - 589766..590086 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  KUU78_RS02795 (KUU78_02795) comF 590128..590853 (-) 726 WP_222821496.1 ComF family protein Machinery gene
  KUU78_RS02800 (KUU78_02800) - 590992..591285 (-) 294 WP_003113255.1 hypothetical protein -
  KUU78_RS02805 (KUU78_02805) - 591339..592265 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  KUU78_RS02810 (KUU78_02810) - 592383..593141 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  KUU78_RS02815 (KUU78_02815) - 593218..593466 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  KUU78_RS02820 (KUU78_02820) - 593477..594853 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  KUU78_RS02825 (KUU78_02825) - 594855..595733 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27060.54 Da        Isoelectric Point: 11.0325

>NTDB_id=512124 KUU78_RS02795 WP_222821496.1 590128..590853(-) (comF) [Pseudomonas aeruginosa strain ZPPH33]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRQVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=512124 KUU78_RS02795 WP_222821496.1 590128..590853(-) (comF) [Pseudomonas aeruginosa strain ZPPH33]
ATGTCGTTCCCGCTTCGTCCTCTCACTCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCAAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.759

100

0.378