Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I4W80_RS11290 Genome accession   NZ_CP065591
Coordinates   2214935..2215228 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain 1817     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209935..2220228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS11240 (I4W80_11240) sinR 2210099..2210434 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  I4W80_RS11245 (I4W80_11245) tasA 2210502..2211302 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  I4W80_RS11250 (I4W80_11250) sipW 2211361..2211933 (-) 573 WP_017357979.1 signal peptidase I SipW -
  I4W80_RS11255 (I4W80_11255) tapA 2211983..2212510 (-) 528 WP_017357980.1 amyloid fiber anchoring/assembly protein TapA -
  I4W80_RS11260 (I4W80_11260) - 2212781..2213089 (+) 309 WP_206116235.1 DUF3889 domain-containing protein -
  I4W80_RS11265 (I4W80_11265) - 2213124..2213318 (-) 195 WP_008342191.1 YqzE family protein -
  I4W80_RS11270 (I4W80_11270) - 2213379..2213762 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  I4W80_RS11275 (I4W80_11275) comGF 2213759..2214256 (-) 498 WP_017357983.1 competence type IV pilus minor pilin ComGF -
  I4W80_RS11280 (I4W80_11280) comGE 2214198..2214512 (-) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  I4W80_RS11285 (I4W80_11285) comGD 2214496..2214942 (-) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  I4W80_RS11290 (I4W80_11290) comGC 2214935..2215228 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  I4W80_RS11295 (I4W80_11295) comGB 2215245..2216285 (-) 1041 WP_017357986.1 competence type IV pilus assembly protein ComGB -
  I4W80_RS11300 (I4W80_11300) comGA 2216266..2217336 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  I4W80_RS11305 (I4W80_11305) - 2217802..2218671 (-) 870 WP_007501231.1 STAS domain-containing protein -
  I4W80_RS11315 (I4W80_11315) - 2218897..2219277 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  I4W80_RS11320 (I4W80_11320) - 2219490..2219732 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=512124 I4W80_RS11290 WP_008342186.1 2214935..2215228(-) (comGC) [Bacillus altitudinis strain 1817]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=512124 I4W80_RS11290 WP_008342186.1 2214935..2215228(-) (comGC) [Bacillus altitudinis strain 1817]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTTATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCAAATGGAAAAGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392