Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I4W80_RS07880 Genome accession   NZ_CP065591
Coordinates   1550219..1551121 (+) Length   300 a.a.
NCBI ID   WP_206116196.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 1817     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1545219..1556121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS07860 (I4W80_07860) - 1545891..1547621 (+) 1731 WP_206116194.1 glycosyltransferase -
  I4W80_RS07865 (I4W80_07865) - 1547618..1547893 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  I4W80_RS07870 (I4W80_07870) sucC 1548070..1549230 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  I4W80_RS07875 (I4W80_07875) sucD 1549253..1550155 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  I4W80_RS07880 (I4W80_07880) dprA 1550219..1551121 (+) 903 WP_206116196.1 DNA-processing protein DprA Machinery gene
  I4W80_RS07885 (I4W80_07885) topA 1551316..1553391 (+) 2076 WP_046526653.1 type I DNA topoisomerase -
  I4W80_RS07890 (I4W80_07890) trmFO 1553462..1554766 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I4W80_RS07895 (I4W80_07895) xerC 1554829..1555746 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34077.42 Da        Isoelectric Point: 8.2776

>NTDB_id=512115 I4W80_RS07880 WP_206116196.1 1550219..1551121(+) (dprA) [Bacillus altitudinis strain 1817]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPTSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=512115 I4W80_RS07880 WP_206116196.1 1550219..1551121(+) (dprA) [Bacillus altitudinis strain 1817]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCAACCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGCGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGTTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCACCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGATTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38
  dprA Legionella pneumophila strain ERS1305867

37.049

100

0.377