Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KTJ86_RS13020 Genome accession   NZ_CP077969
Coordinates   2650358..2651095 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JM83     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2645358..2656095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTJ86_RS13005 clpC 2645812..2648385 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KTJ86_RS13010 yfiH 2648515..2649246 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  KTJ86_RS13015 rluD 2649243..2650223 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KTJ86_RS13020 comL 2650358..2651095 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KTJ86_RS13025 raiA 2651366..2651707 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KTJ86_RS13030 pheL 2651811..2651858 (+) 48 WP_010723158.1 phe operon leader peptide -
  KTJ86_RS13035 pheA 2651957..2653117 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  KTJ86_RS13040 tyrA 2653160..2654281 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KTJ86_RS13045 aroF 2654292..2655362 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KTJ86_RS13050 yfiL 2655572..2655937 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=512069 KTJ86_RS13020 WP_000197686.1 2650358..2651095(+) (comL) [Escherichia coli strain JM83]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=512069 KTJ86_RS13020 WP_000197686.1 2650358..2651095(+) (comL) [Escherichia coli strain JM83]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376