Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   M892_RS07870 Genome accession   NC_022269
Coordinates   1712390..1713118 (+) Length   242 a.a.
NCBI ID   WP_005425318.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1707390..1718118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS07855 (M892_07875) clpC 1707826..1710399 (-) 2574 WP_012127063.1 ATP-dependent chaperone ClpB Regulator
  M892_RS07860 (M892_07880) pgeF 1710546..1711274 (-) 729 WP_012127062.1 peptidoglycan editing factor PgeF -
  M892_RS07865 (M892_07885) rluD 1711276..1712253 (-) 978 WP_005425317.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  M892_RS07870 (M892_07890) comL 1712390..1713118 (+) 729 WP_005425318.1 outer membrane protein assembly factor BamD Machinery gene
  M892_RS07875 (M892_07895) - 1713261..1714730 (+) 1470 WP_012127061.1 lytic transglycosylase F -
  M892_RS07880 (M892_07900) raiA 1715107..1715433 (+) 327 WP_012127060.1 ribosome-associated translation inhibitor RaiA -
  M892_RS07885 (M892_07905) pheA 1715677..1716855 (+) 1179 WP_005533293.1 prephenate dehydratase -
  M892_RS07890 (M892_07910) yjjX 1716898..1717431 (+) 534 WP_041853416.1 inosine/xanthosine triphosphatase -
  M892_RS07895 (M892_07915) trpR 1717546..1717848 (-) 303 WP_005425333.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27847.63 Da        Isoelectric Point: 5.2063

>NTDB_id=51196 M892_RS07870 WP_005425318.1 1712390..1713118(+) (comL) [Vibrio campbellii ATCC BAA-1116]
MKHQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQTSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNVDRSDRDPEPVKKAFDDFKKLLERYPNSPYAED
SQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKAFPDTEAARKSLEIQLEAYKQLKLDDAVARTEELIKLNP
AN

Nucleotide


Download         Length: 729 bp        

>NTDB_id=51196 M892_RS07870 WP_005425318.1 1712390..1713118(+) (comL) [Vibrio campbellii ATCC BAA-1116]
ATGAAACATCAGACTTTAACAGGCCTTTTAGCGGTATCCCTTCTGTTTGGCTGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCTGAACTGTATGCAGACGCGCAAACTTCTCTGCAAAGCGGTAACTGGCTTTCTGCCATCGAAAAACTAG
AAGCTTTGGATTCGCGTTACCCGTTTGGTGCCTACTCTGAGCAGGTACAACTTGACCTTATCTACGCGTACTACAAAAAC
GATGACCTAGCATTAGGTCTGGCAACGATCTCTCGCTTTATGCGTTTGAACCCGACTCACGAAAAAATGGACTGGGTTTT
GTACATGCGTGGTTTGAGCCACATGGCGCAAGACCGTAACTTCATGCATGACTTGTTCAACGTTGATCGTAGTGACCGTG
ATCCAGAGCCAGTGAAGAAAGCATTCGACGACTTCAAAAAGCTGCTAGAACGTTACCCGAACAGCCCATATGCGGAAGAT
TCACAGAAACGTATGGTGGCGCTAAAGAACCGTCTTGCAAACTACGATCTAGCGACGGCAGACTTCTACTTGCGTCGTGA
AGCTTGGATTGCAGCGATCAACCGTTCTCAAGAGCTTCAAAAAGCGTTCCCTGACACAGAAGCGGCGCGCAAATCACTTG
AGATTCAGTTAGAAGCCTACAAGCAATTGAAACTGGATGACGCCGTTGCAAGAACGGAAGAGCTTATCAAGCTTAACCCA
GCAAACTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.174

0.393
  comL Neisseria gonorrhoeae MS11

39.167

99.174

0.388

Multiple sequence alignment