Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JNUCC51_RS11735 Genome accession   NZ_CP065545
Coordinates   2446334..2446903 (+) Length   189 a.a.
NCBI ID   WP_337992085.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-51     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2441334..2451903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC51_RS11705 (JNUCC51_11620) - 2441640..2442524 (+) 885 WP_337992081.1 mechanosensitive ion channel family protein -
  JNUCC51_RS11710 (JNUCC51_11625) - 2442526..2442726 (+) 201 WP_337992082.1 DUF951 domain-containing protein -
  JNUCC51_RS11715 (JNUCC51_11630) ychF 2442973..2444073 (+) 1101 WP_049662606.1 redox-regulated ATPase YchF -
  JNUCC51_RS11720 (JNUCC51_11635) - 2444156..2445196 (+) 1041 WP_337992083.1 acyl-CoA dehydrogenase -
  JNUCC51_RS11725 (JNUCC51_11640) - 2445265..2445828 (-) 564 WP_337992084.1 DUF3267 domain-containing protein -
  JNUCC51_RS11730 (JNUCC51_11645) rpsF 2446002..2446289 (+) 288 WP_053482932.1 30S ribosomal protein S6 -
  JNUCC51_RS11735 (JNUCC51_11650) ssbA 2446334..2446903 (+) 570 WP_337992085.1 single-stranded DNA-binding protein Machinery gene
  JNUCC51_RS11740 (JNUCC51_11655) rpsR 2446942..2447178 (+) 237 WP_012296211.1 30S ribosomal protein S18 -
  JNUCC51_RS11745 (JNUCC51_11660) - 2447783..2448724 (+) 942 WP_337992086.1 YybS family protein -
  JNUCC51_RS11750 (JNUCC51_11665) - 2448737..2450710 (+) 1974 WP_337992087.1 DHH family phosphoesterase -
  JNUCC51_RS11755 (JNUCC51_11670) rplI 2450707..2451153 (+) 447 WP_337992088.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20635.61 Da        Isoelectric Point: 4.7621

>NTDB_id=511839 JNUCC51_RS11735 WP_337992085.1 2446334..2446903(+) (ssbA) [Lysinibacillus sp. JNUCC-51]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRTFSNQQGDREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNASGAPAPQYGGQNTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=511839 JNUCC51_RS11735 WP_337992085.1 2446334..2446903(+) (ssbA) [Lysinibacillus sp. JNUCC-51]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGCTATACGCCTAATGGTGTTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGAACATTCTCAAACCAACAAGGTGATCGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGCAAACAGGCTGAAAACTTAGCAAACTTCATGCGAAAAGGAAGTTTGATTGGAGTGGAAGGTCGCATTCAAACAGGC
AGCTATGAAGGACAAGATGGTAAACGAGTATACACAACAGATGTAGTGGCAGATAGCGTACAGTTTTTAGAGCCTCGTAA
TGCTAGCGGTGCTCCTGCTCCTCAATATGGTGGGCAGAATACTTACGGTAATAATCAACCGTCATATGGCGGTGGACAAC
CACAGCAACAGTTTGGTGGTGCTATGCCAGGGCAGGGTTCATATGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCGAATTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATAGAAGTATCTGAGGATGATTT
ACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.158

100

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

48.677

100

0.487